Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00477Q96M19 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00477Q96M19 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00477Q96M19 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00477Q96M19 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00477Q96M19 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00477Q96M19 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00477Q96M19 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00477Q96M19 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00477Q96M19 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00477Q96M19 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC12.29□□□□□ -0.44
LINC00477Q96M19 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC12.29□□□□□ -0.44
LINC00477Q96M19 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
LINC00477Q96M19 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC12.29□□□□□ -0.44
LINC00477Q96M19 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00477Q96M19 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC12.28□□□□□ -0.44
LINC00477Q96M19 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC12.28□□□□□ -0.44
LINC00477Q96M19 CDC14C-201ENST00000428251 1719 ntBASIC12.28□□□□□ -0.44
LINC00477Q96M19 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00477Q96M19 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC12.28□□□□□ -0.44
LINC00477Q96M19 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00477Q96M19 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00477Q96M19 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00477Q96M19 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00477Q96M19 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
LINC00477Q96M19 PAUPAR-201ENST00000630360 2965 ntBASIC12.28□□□□□ -0.44
LINC00477Q96M19 LINC02447-202ENST00000501888 2146 ntBASIC12.28□□□□□ -0.44
LINC00477Q96M19 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00477Q96M19 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
LINC00477Q96M19 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC12.28□□□□□ -0.44
LINC00477Q96M19 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
LINC00477Q96M19 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC12.28□□□□□ -0.44
LINC00477Q96M19 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00477Q96M19 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
LINC00477Q96M19 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
LINC00477Q96M19 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
LINC00477Q96M19 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
LINC00477Q96M19 METTL26-205ENST00000397666 726 ntTSL 2 BASIC12.28□□□□□ -0.44
LINC00477Q96M19 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC12.28□□□□□ -0.44
LINC00477Q96M19 SLC4A1APP2-201ENST00000424054 1259 ntBASIC12.28□□□□□ -0.44
LINC00477Q96M19 FAM185BP-201ENST00000443595 716 ntBASIC12.28□□□□□ -0.44
LINC00477Q96M19 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC12.28□□□□□ -0.44
LINC00477Q96M19 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC12.28□□□□□ -0.44
LINC00477Q96M19 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
LINC00477Q96M19 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00477Q96M19 CIPC-205ENST00000555437 566 ntTSL 3 BASIC12.28□□□□□ -0.44
LINC00477Q96M19 RPS29-206ENST00000557111 488 ntTSL 2 BASIC12.28□□□□□ -0.44
LINC00477Q96M19 BMF-207ENST00000559701 630 ntTSL 3 BASIC12.28□□□□□ -0.44
LINC00477Q96M19 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC12.28□□□□□ -0.44
LINC00477Q96M19 MIR3909-201ENST00000579518 119 ntBASIC12.28□□□□□ -0.44
LINC00477Q96M19 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
LINC00477Q96M19 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00477Q96M19 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00477Q96M19 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00477Q96M19 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00477Q96M19 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
LINC00477Q96M19 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
LINC00477Q96M19 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00477Q96M19 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC12.28□□□□□ -0.44
LINC00477Q96M19 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00477Q96M19 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00477Q96M19 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00477Q96M19 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC12.28□□□□□ -0.44
LINC00477Q96M19 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC12.28□□□□□ -0.44
LINC00477Q96M19 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
LINC00477Q96M19 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC12.28□□□□□ -0.44
LINC00477Q96M19 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00477Q96M19 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC12.28□□□□□ -0.44
LINC00477Q96M19 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00477Q96M19 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00477Q96M19 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00477Q96M19 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00477Q96M19 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
LINC00477Q96M19 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC12.27□□□□□ -0.44
LINC00477Q96M19 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
LINC00477Q96M19 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
LINC00477Q96M19 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC12.27□□□□□ -0.44
LINC00477Q96M19 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC12.27□□□□□ -0.44
LINC00477Q96M19 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.44
LINC00477Q96M19 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC12.27□□□□□ -0.44
LINC00477Q96M19 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
LINC00477Q96M19 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.44
LINC00477Q96M19 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
LINC00477Q96M19 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC12.27□□□□□ -0.44
LINC00477Q96M19 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC12.27□□□□□ -0.44
LINC00477Q96M19 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
LINC00477Q96M19 TK2-221ENST00000620035 5060 ntTSL 2 BASIC12.27□□□□□ -0.45
LINC00477Q96M19 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC12.27□□□□□ -0.45
LINC00477Q96M19 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
LINC00477Q96M19 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
LINC00477Q96M19 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
LINC00477Q96M19 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC12.27□□□□□ -0.45
LINC00477Q96M19 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC12.27□□□□□ -0.45
LINC00477Q96M19 VMO1-203ENST00000416307 712 ntTSL 2 BASIC12.27□□□□□ -0.45
LINC00477Q96M19 AF186996.4-201ENST00000467186 377 ntBASIC12.27□□□□□ -0.45
LINC00477Q96M19 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC12.27□□□□□ -0.45
LINC00477Q96M19 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC12.27□□□□□ -0.45
LINC00477Q96M19 CLEC4GP1-201ENST00000596555 870 ntBASIC12.27□□□□□ -0.45
LINC00477Q96M19 IFNL4P1-201ENST00000607083 540 ntBASIC12.27□□□□□ -0.45
LINC00477Q96M19 TP73-AS1-207ENST00000624167 988 ntBASIC12.27□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms