Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC60Q8IWA6 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 PCDHA14-201ENST00000506751 2298 ntBASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 GOLGA6L11P-201ENST00000417252 1298 ntBASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 REEP4-207ENST00000523293 913 ntTSL 3 BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 ZNF890P-202ENST00000530367 1156 ntBASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 PRR29-204ENST00000577953 565 ntTSL 4 BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC60Q8IWA6 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 SPTLC1P1-201ENST00000447199 261 ntBASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 AC009118.2-201ENST00000613275 655 ntBASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 AL033527.5-202ENST00000641632 1098 ntBASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
CCDC60Q8IWA6 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC60Q8IWA6 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC60Q8IWA6 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
CCDC60Q8IWA6 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
CCDC60Q8IWA6 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC60Q8IWA6 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC18.02■□□□□ 0.48
CCDC60Q8IWA6 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC18.02■□□□□ 0.48
CCDC60Q8IWA6 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
CCDC60Q8IWA6 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC60Q8IWA6 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC60Q8IWA6 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC60Q8IWA6 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC60Q8IWA6 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC18.02■□□□□ 0.48
CCDC60Q8IWA6 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC60Q8IWA6 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms