Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIG3P49916 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
LIG3P49916 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
LIG3P49916 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIG3P49916 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC17.26■□□□□ 0.35
LIG3P49916 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC17.26■□□□□ 0.35
LIG3P49916 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LIG3P49916 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LIG3P49916 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIG3P49916 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIG3P49916 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
LIG3P49916 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIG3P49916 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIG3P49916 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LIG3P49916 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIG3P49916 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.26■□□□□ 0.35
LIG3P49916 LBH-204ENST00000406087 559 ntTSL 4 BASIC17.26■□□□□ 0.35
LIG3P49916 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC17.26■□□□□ 0.35
LIG3P49916 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
LIG3P49916 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC17.26■□□□□ 0.35
LIG3P49916 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LIG3P49916 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC17.26■□□□□ 0.35
LIG3P49916 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
LIG3P49916 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.26■□□□□ 0.35
LIG3P49916 AL805961.1-202ENST00000641562 540 ntBASIC17.26■□□□□ 0.35
LIG3P49916 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIG3P49916 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LIG3P49916 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIG3P49916 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIG3P49916 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
LIG3P49916 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIG3P49916 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIG3P49916 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
LIG3P49916 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC17.26■□□□□ 0.35
LIG3P49916 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIG3P49916 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIG3P49916 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIG3P49916 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIG3P49916 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC17.25■□□□□ 0.35
LIG3P49916 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.25■□□□□ 0.35
LIG3P49916 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.25■□□□□ 0.35
LIG3P49916 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LIG3P49916 AL590787.1-201ENST00000568856 1315 ntBASIC17.25■□□□□ 0.35
LIG3P49916 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC17.25■□□□□ 0.35
LIG3P49916 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIG3P49916 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIG3P49916 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
LIG3P49916 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
LIG3P49916 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
LIG3P49916 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIG3P49916 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.25■□□□□ 0.35
LIG3P49916 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
LIG3P49916 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIG3P49916 POLD2P1-201ENST00000511220 997 ntBASIC17.25■□□□□ 0.35
LIG3P49916 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
LIG3P49916 AC008667.4-201ENST00000607370 168 ntBASIC17.25■□□□□ 0.35
LIG3P49916 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
LIG3P49916 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC17.25■□□□□ 0.35
LIG3P49916 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIG3P49916 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC17.25■□□□□ 0.35
LIG3P49916 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIG3P49916 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
LIG3P49916 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIG3P49916 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIG3P49916 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
LIG3P49916 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.25■□□□□ 0.35
LIG3P49916 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
LIG3P49916 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC17.24■□□□□ 0.35
LIG3P49916 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIG3P49916 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LIG3P49916 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIG3P49916 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIG3P49916 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.24■□□□□ 0.35
LIG3P49916 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIG3P49916 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LIG3P49916 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIG3P49916 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC17.24■□□□□ 0.35
LIG3P49916 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC17.24■□□□□ 0.35
LIG3P49916 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
LIG3P49916 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
LIG3P49916 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC17.24■□□□□ 0.35
LIG3P49916 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIG3P49916 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIG3P49916 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIG3P49916 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
LIG3P49916 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
LIG3P49916 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LIG3P49916 IGHV3-65-201ENST00000523210 341 ntBASIC17.24■□□□□ 0.35
LIG3P49916 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17.24■□□□□ 0.35
LIG3P49916 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIG3P49916 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC17.24■□□□□ 0.35
LIG3P49916 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.24■□□□□ 0.35
LIG3P49916 AC027601.4-201ENST00000611259 610 ntBASIC17.24■□□□□ 0.35
LIG3P49916 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
LIG3P49916 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
LIG3P49916 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
LIG3P49916 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC17.24■□□□□ 0.35
LIG3P49916 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
LIG3P49916 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
LIG3P49916 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms