Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CDX1P47902 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
CDX1P47902 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CDX1P47902 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CDX1P47902 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CDX1P47902 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
CDX1P47902 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
CDX1P47902 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
CDX1P47902 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CDX1P47902 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CDX1P47902 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CDX1P47902 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC13.42□□□□□ -0.26
CDX1P47902 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC13.42□□□□□ -0.26
CDX1P47902 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CDX1P47902 AP002414.2-201ENST00000591780 3365 ntBASIC13.42□□□□□ -0.26
CDX1P47902 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CDX1P47902 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CDX1P47902 AC006504.4-201ENST00000592118 1568 ntBASIC13.42□□□□□ -0.26
CDX1P47902 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CDX1P47902 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
CDX1P47902 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC13.42□□□□□ -0.26
CDX1P47902 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
CDX1P47902 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC13.42□□□□□ -0.26
CDX1P47902 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CDX1P47902 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC13.42□□□□□ -0.26
CDX1P47902 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC13.42□□□□□ -0.26
CDX1P47902 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CDX1P47902 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
CDX1P47902 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CDX1P47902 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CDX1P47902 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC13.42□□□□□ -0.26
CDX1P47902 LBH-204ENST00000406087 559 ntTSL 4 BASIC13.42□□□□□ -0.26
CDX1P47902 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC13.42□□□□□ -0.26
CDX1P47902 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
CDX1P47902 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CDX1P47902 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
CDX1P47902 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC13.42□□□□□ -0.26
CDX1P47902 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC13.42□□□□□ -0.26
CDX1P47902 TERC-201ENST00000602385 541 ntBASIC13.42□□□□□ -0.26
CDX1P47902 AL671883.3-201ENST00000603274 991 ntBASIC13.42□□□□□ -0.26
CDX1P47902 AL353135.1-201ENST00000606729 504 ntBASIC13.42□□□□□ -0.26
CDX1P47902 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
CDX1P47902 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC13.42□□□□□ -0.26
CDX1P47902 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CDX1P47902 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
CDX1P47902 AC026748.1-201ENST00000624349 3251 ntBASIC13.42□□□□□ -0.26
CDX1P47902 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC13.42□□□□□ -0.26
CDX1P47902 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
CDX1P47902 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC13.42□□□□□ -0.26
CDX1P47902 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CDX1P47902 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
CDX1P47902 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
CDX1P47902 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CDX1P47902 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
CDX1P47902 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CDX1P47902 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CDX1P47902 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
CDX1P47902 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC13.42□□□□□ -0.26
CDX1P47902 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC13.42□□□□□ -0.26
CDX1P47902 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CDX1P47902 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CDX1P47902 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
CDX1P47902 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CDX1P47902 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CDX1P47902 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CDX1P47902 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC13.41□□□□□ -0.26
CDX1P47902 PMS2P7-201ENST00000506558 1336 ntBASIC13.41□□□□□ -0.26
CDX1P47902 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC13.41□□□□□ -0.26
CDX1P47902 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC13.41□□□□□ -0.26
CDX1P47902 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC13.41□□□□□ -0.26
CDX1P47902 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
CDX1P47902 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
CDX1P47902 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CDX1P47902 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CDX1P47902 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC13.41□□□□□ -0.26
CDX1P47902 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
CDX1P47902 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
CDX1P47902 ELK2BP-201ENST00000415014 1224 ntBASIC13.41□□□□□ -0.26
CDX1P47902 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CDX1P47902 AC009947.1-201ENST00000444350 727 ntBASIC13.41□□□□□ -0.26
CDX1P47902 RPS15P9-201ENST00000494093 319 ntBASIC13.41□□□□□ -0.26
CDX1P47902 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC13.41□□□□□ -0.26
CDX1P47902 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC13.41□□□□□ -0.26
CDX1P47902 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC13.41□□□□□ -0.26
CDX1P47902 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC13.41□□□□□ -0.26
CDX1P47902 AC008667.4-201ENST00000607370 168 ntBASIC13.41□□□□□ -0.26
CDX1P47902 GGTLC5P-201ENST00000617623 998 ntBASIC13.41□□□□□ -0.26
CDX1P47902 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC13.41□□□□□ -0.26
CDX1P47902 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC13.41□□□□□ -0.26
CDX1P47902 AL805961.1-202ENST00000641562 540 ntBASIC13.41□□□□□ -0.26
CDX1P47902 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
CDX1P47902 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
CDX1P47902 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC13.41□□□□□ -0.26
CDX1P47902 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CDX1P47902 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CDX1P47902 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC13.41□□□□□ -0.26
CDX1P47902 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC13.41□□□□□ -0.26
CDX1P47902 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CDX1P47902 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CDX1P47902 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms