Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC16.94■□□□□ 0.3
PTPN9P43378 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTPN9P43378 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC16.94■□□□□ 0.3
PTPN9P43378 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC16.94■□□□□ 0.3
PTPN9P43378 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC16.94■□□□□ 0.3
PTPN9P43378 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC16.94■□□□□ 0.3
PTPN9P43378 AC004835.2-201ENST00000603762 682 ntBASIC16.94■□□□□ 0.3
PTPN9P43378 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PTPN9P43378 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTPN9P43378 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
PTPN9P43378 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
PTPN9P43378 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTPN9P43378 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC16.94■□□□□ 0.3
PTPN9P43378 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
PTPN9P43378 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.94■□□□□ 0.3
PTPN9P43378 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
PTPN9P43378 AC022188.1-201ENST00000620960 1664 ntBASIC16.94■□□□□ 0.3
PTPN9P43378 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
PTPN9P43378 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PTPN9P43378 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.94■□□□□ 0.3
PTPN9P43378 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PTPN9P43378 AL365203.3-201ENST00000609742 2057 ntBASIC16.93■□□□□ 0.3
PTPN9P43378 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.93■□□□□ 0.3
PTPN9P43378 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN9P43378 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN9P43378 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN9P43378 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
PTPN9P43378 LINC02447-202ENST00000501888 2146 ntBASIC16.93■□□□□ 0.3
PTPN9P43378 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN9P43378 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC16.93■□□□□ 0.3
PTPN9P43378 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN9P43378 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN9P43378 AC254562.1-201ENST00000417586 456 ntBASIC16.93■□□□□ 0.3
PTPN9P43378 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC16.93■□□□□ 0.3
PTPN9P43378 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC16.93■□□□□ 0.3
PTPN9P43378 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC16.93■□□□□ 0.3
PTPN9P43378 RNA5SP410-201ENST00000516285 106 ntBASIC16.93■□□□□ 0.3
PTPN9P43378 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC16.93■□□□□ 0.3
PTPN9P43378 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN9P43378 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN9P43378 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN9P43378 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN9P43378 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN9P43378 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.93■□□□□ 0.3
PTPN9P43378 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC16.93■□□□□ 0.3
PTPN9P43378 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN9P43378 AP3S2-216ENST00000617003 1561 ntBASIC16.93■□□□□ 0.3
PTPN9P43378 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
PTPN9P43378 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN9P43378 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
PTPN9P43378 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN9P43378 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN9P43378 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.93■□□□□ 0.3
PTPN9P43378 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN9P43378 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN9P43378 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
PTPN9P43378 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PTPN9P43378 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
PTPN9P43378 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
PTPN9P43378 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.92■□□□□ 0.3
PTPN9P43378 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC16.92■□□□□ 0.3
PTPN9P43378 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.92■□□□□ 0.3
PTPN9P43378 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC16.92■□□□□ 0.3
PTPN9P43378 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTPN9P43378 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTPN9P43378 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC16.92■□□□□ 0.3
PTPN9P43378 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTPN9P43378 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PTPN9P43378 KRT18P32-201ENST00000424695 1287 ntBASIC16.92■□□□□ 0.3
PTPN9P43378 FAM58DP-201ENST00000428076 619 ntBASIC16.92■□□□□ 0.3
PTPN9P43378 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.92■□□□□ 0.3
PTPN9P43378 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
PTPN9P43378 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16.92■□□□□ 0.3
PTPN9P43378 AC023511.2-201ENST00000618803 211 ntBASIC16.92■□□□□ 0.3
PTPN9P43378 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTPN9P43378 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC16.92■□□□□ 0.3
PTPN9P43378 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTPN9P43378 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTPN9P43378 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
PTPN9P43378 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.92■□□□□ 0.3
PTPN9P43378 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PTPN9P43378 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
PTPN9P43378 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTPN9P43378 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTPN9P43378 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTPN9P43378 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTPN9P43378 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTPN9P43378 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTPN9P43378 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTPN9P43378 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTPN9P43378 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC16.91■□□□□ 0.3
PTPN9P43378 AC112504.1-201ENST00000623415 1841 ntBASIC16.91■□□□□ 0.3
PTPN9P43378 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC16.91■□□□□ 0.3
PTPN9P43378 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTPN9P43378 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
PTPN9P43378 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
PTPN9P43378 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC16.91■□□□□ 0.3
PTPN9P43378 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
PTPN9P43378 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTPN9P43378 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms