Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CXCL1P09341 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC12.72□□□□□ -0.37
CXCL1P09341 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
CXCL1P09341 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
CXCL1P09341 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CXCL1P09341 CICP8-201ENST00000455800 2813 ntBASIC12.72□□□□□ -0.37
CXCL1P09341 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CXCL1P09341 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CXCL1P09341 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
CXCL1P09341 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CXCL1P09341 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
CXCL1P09341 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CXCL1P09341 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CXCL1P09341 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CXCL1P09341 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
CXCL1P09341 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC12.72□□□□□ -0.37
CXCL1P09341 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CXCL1P09341 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CXCL1P09341 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CXCL1P09341 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CXCL1P09341 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
CXCL1P09341 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CXCL1P09341 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
CXCL1P09341 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CXCL1P09341 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CXCL1P09341 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CXCL1P09341 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
CXCL1P09341 AL353692.3-201ENST00000407031 1396 ntBASIC12.71□□□□□ -0.37
CXCL1P09341 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CXCL1P09341 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC12.71□□□□□ -0.37
CXCL1P09341 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CXCL1P09341 LINC01230-201ENST00000625222 3017 ntBASIC12.71□□□□□ -0.37
CXCL1P09341 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CXCL1P09341 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC12.71□□□□□ -0.37
CXCL1P09341 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC12.71□□□□□ -0.37
CXCL1P09341 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
CXCL1P09341 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC12.71□□□□□ -0.37
CXCL1P09341 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC12.71□□□□□ -0.37
CXCL1P09341 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CXCL1P09341 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CXCL1P09341 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CXCL1P09341 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CXCL1P09341 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC12.71□□□□□ -0.37
CXCL1P09341 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC12.71□□□□□ -0.37
CXCL1P09341 AC122714.2-201ENST00000502787 707 ntBASIC12.71□□□□□ -0.37
CXCL1P09341 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC12.71□□□□□ -0.37
CXCL1P09341 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CXCL1P09341 AC008550.1-201ENST00000511500 884 ntBASIC12.71□□□□□ -0.37
CXCL1P09341 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC12.71□□□□□ -0.37
CXCL1P09341 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
CXCL1P09341 AC111152.3-201ENST00000569699 673 ntBASIC12.71□□□□□ -0.37
CXCL1P09341 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC12.71□□□□□ -0.37
CXCL1P09341 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC12.71□□□□□ -0.37
CXCL1P09341 CLN6-221ENST00000637494 765 ntTSL 5 BASIC12.71□□□□□ -0.37
CXCL1P09341 AL031432.5-201ENST00000641059 760 ntBASIC12.71□□□□□ -0.37
CXCL1P09341 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CXCL1P09341 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
CXCL1P09341 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
CXCL1P09341 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
CXCL1P09341 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CXCL1P09341 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.38
CXCL1P09341 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
CXCL1P09341 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
CXCL1P09341 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
CXCL1P09341 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
CXCL1P09341 GPI-205ENST00000586425 1799 ntTSL 5 BASIC12.71□□□□□ -0.38
CXCL1P09341 CYP2D8P-201ENST00000433633 1490 ntBASIC12.71□□□□□ -0.38
CXCL1P09341 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC12.71□□□□□ -0.38
CXCL1P09341 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.38
CXCL1P09341 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC12.71□□□□□ -0.38
CXCL1P09341 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
CXCL1P09341 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
CXCL1P09341 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC12.71□□□□□ -0.38
CXCL1P09341 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
CXCL1P09341 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.38
CXCL1P09341 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
CXCL1P09341 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CXCL1P09341 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CXCL1P09341 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CXCL1P09341 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
CXCL1P09341 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CXCL1P09341 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CXCL1P09341 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC12.7□□□□□ -0.38
CXCL1P09341 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CXCL1P09341 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC12.7□□□□□ -0.38
CXCL1P09341 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CXCL1P09341 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CXCL1P09341 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC12.7□□□□□ -0.38
CXCL1P09341 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CXCL1P09341 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC12.7□□□□□ -0.38
CXCL1P09341 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CXCL1P09341 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CXCL1P09341 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
CXCL1P09341 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC12.7□□□□□ -0.38
CXCL1P09341 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CXCL1P09341 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CXCL1P09341 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CXCL1P09341 AC010460.3-201ENST00000511359 1579 ntBASIC12.7□□□□□ -0.38
CXCL1P09341 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC12.7□□□□□ -0.38
CXCL1P09341 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms