Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC22.5■■□□□ 1.19
NPHP4O75161 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
NPHP4O75161 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
NPHP4O75161 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
NPHP4O75161 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
NPHP4O75161 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
NPHP4O75161 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
NPHP4O75161 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
NPHP4O75161 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC22.49■■□□□ 1.19
NPHP4O75161 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
NPHP4O75161 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
NPHP4O75161 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
NPHP4O75161 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
NPHP4O75161 MAGEA5-201ENST00000446757 942 ntBASIC22.49■■□□□ 1.19
NPHP4O75161 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC22.49■■□□□ 1.19
NPHP4O75161 AP001582.1-201ENST00000525856 295 ntBASIC22.49■■□□□ 1.19
NPHP4O75161 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC22.49■■□□□ 1.19
NPHP4O75161 AC093813.1-201ENST00000605066 256 ntBASIC22.49■■□□□ 1.19
NPHP4O75161 AC145423.3-201ENST00000615987 467 ntBASIC22.49■■□□□ 1.19
NPHP4O75161 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC22.49■■□□□ 1.19
NPHP4O75161 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC22.49■■□□□ 1.19
NPHP4O75161 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC22.49■■□□□ 1.19
NPHP4O75161 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
NPHP4O75161 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
NPHP4O75161 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC22.49■■□□□ 1.19
NPHP4O75161 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
NPHP4O75161 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
NPHP4O75161 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC22.49■■□□□ 1.19
NPHP4O75161 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC22.49■■□□□ 1.19
NPHP4O75161 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
NPHP4O75161 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC22.49■■□□□ 1.19
NPHP4O75161 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC22.49■■□□□ 1.19
NPHP4O75161 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
NPHP4O75161 SDCCAG3P2-201ENST00000326105 1023 ntBASIC22.48■■□□□ 1.19
NPHP4O75161 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC22.48■■□□□ 1.19
NPHP4O75161 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC22.48■■□□□ 1.19
NPHP4O75161 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC22.48■■□□□ 1.19
NPHP4O75161 LBH-202ENST00000401506 485 ntTSL 3 BASIC22.48■■□□□ 1.19
NPHP4O75161 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
NPHP4O75161 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC22.48■■□□□ 1.19
NPHP4O75161 SPTLC1P5-201ENST00000450718 252 ntBASIC22.48■■□□□ 1.19
NPHP4O75161 AC008267.1-201ENST00000474858 1069 ntBASIC22.48■■□□□ 1.19
NPHP4O75161 SDHD-202ENST00000525291 790 ntTSL 3 BASIC22.48■■□□□ 1.19
NPHP4O75161 AP003419.4-201ENST00000616071 517 ntBASIC22.48■■□□□ 1.19
NPHP4O75161 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC22.48■■□□□ 1.19
NPHP4O75161 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC22.48■■□□□ 1.19
NPHP4O75161 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
NPHP4O75161 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
NPHP4O75161 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
NPHP4O75161 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC22.48■■□□□ 1.19
NPHP4O75161 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
NPHP4O75161 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
NPHP4O75161 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
NPHP4O75161 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
NPHP4O75161 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC22.48■■□□□ 1.19
NPHP4O75161 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
NPHP4O75161 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
NPHP4O75161 AL355334.1-201ENST00000417713 215 ntBASIC22.48■■□□□ 1.19
NPHP4O75161 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC22.48■■□□□ 1.19
NPHP4O75161 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
NPHP4O75161 KRT18P43-201ENST00000469825 1281 ntBASIC22.48■■□□□ 1.19
NPHP4O75161 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC22.48■■□□□ 1.19
NPHP4O75161 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
NPHP4O75161 FGFR3P5-201ENST00000564496 886 ntBASIC22.48■■□□□ 1.19
NPHP4O75161 AC138649.2-201ENST00000615886 705 ntBASIC22.48■■□□□ 1.19
NPHP4O75161 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC22.48■■□□□ 1.19
NPHP4O75161 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
NPHP4O75161 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
NPHP4O75161 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC22.48■■□□□ 1.19
NPHP4O75161 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC22.47■■□□□ 1.19
NPHP4O75161 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC22.47■■□□□ 1.19
NPHP4O75161 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC22.47■■□□□ 1.19
NPHP4O75161 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
NPHP4O75161 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC22.47■■□□□ 1.19
NPHP4O75161 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC22.47■■□□□ 1.19
NPHP4O75161 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
NPHP4O75161 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC22.47■■□□□ 1.19
NPHP4O75161 AL121723.1-201ENST00000445194 1519 ntBASIC22.47■■□□□ 1.19
NPHP4O75161 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
NPHP4O75161 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC22.47■■□□□ 1.19
NPHP4O75161 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC22.47■■□□□ 1.19
NPHP4O75161 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
NPHP4O75161 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
NPHP4O75161 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC22.47■■□□□ 1.19
NPHP4O75161 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
NPHP4O75161 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
NPHP4O75161 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC22.47■■□□□ 1.19
NPHP4O75161 CNN2P10-201ENST00000443067 918 ntBASIC22.47■■□□□ 1.19
NPHP4O75161 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC22.47■■□□□ 1.19
NPHP4O75161 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC22.47■■□□□ 1.19
NPHP4O75161 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC22.47■■□□□ 1.19
NPHP4O75161 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC22.47■■□□□ 1.19
NPHP4O75161 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
NPHP4O75161 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
NPHP4O75161 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
NPHP4O75161 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
NPHP4O75161 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC22.46■■□□□ 1.19
NPHP4O75161 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
NPHP4O75161 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
NPHP4O75161 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 63.3 ms