Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 AC006449.5-201ENST00000610658 2098 ntBASIC17.83■□□□□ 0.44
CLDN3O15551 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
CLDN3O15551 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
CLDN3O15551 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
CLDN3O15551 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLDN3O15551 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC17.82■□□□□ 0.44
CLDN3O15551 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLDN3O15551 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLDN3O15551 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CLDN3O15551 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC17.82■□□□□ 0.44
CLDN3O15551 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLDN3O15551 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLDN3O15551 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLDN3O15551 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLDN3O15551 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
CLDN3O15551 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
CLDN3O15551 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CLDN3O15551 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLDN3O15551 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLDN3O15551 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CLDN3O15551 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLDN3O15551 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLDN3O15551 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
CLDN3O15551 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
CLDN3O15551 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLDN3O15551 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
CLDN3O15551 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLDN3O15551 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC17.82■□□□□ 0.44
CLDN3O15551 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC17.82■□□□□ 0.44
CLDN3O15551 FAM86GP-201ENST00000448322 971 ntBASIC17.82■□□□□ 0.44
CLDN3O15551 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLDN3O15551 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC17.82■□□□□ 0.44
CLDN3O15551 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC17.82■□□□□ 0.44
CLDN3O15551 RFPL4AP1-201ENST00000530883 850 ntBASIC17.82■□□□□ 0.44
CLDN3O15551 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC17.82■□□□□ 0.44
CLDN3O15551 RPL28-205ENST00000558131 444 ntTSL 5 BASIC17.82■□□□□ 0.44
CLDN3O15551 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLDN3O15551 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CLDN3O15551 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
CLDN3O15551 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
CLDN3O15551 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CLDN3O15551 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLDN3O15551 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLDN3O15551 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLDN3O15551 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLDN3O15551 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CLDN3O15551 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLDN3O15551 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLDN3O15551 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CLDN3O15551 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CLDN3O15551 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLDN3O15551 TUBB3P1-201ENST00000405796 1332 ntBASIC17.81■□□□□ 0.44
CLDN3O15551 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC17.81■□□□□ 0.44
CLDN3O15551 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLDN3O15551 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
CLDN3O15551 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC17.81■□□□□ 0.44
CLDN3O15551 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
CLDN3O15551 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLDN3O15551 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLDN3O15551 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CLDN3O15551 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CLDN3O15551 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CLDN3O15551 AC067863.1-201ENST00000494933 530 ntBASIC17.81■□□□□ 0.44
CLDN3O15551 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLDN3O15551 AC027796.2-201ENST00000575326 344 ntBASIC17.81■□□□□ 0.44
CLDN3O15551 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC17.81■□□□□ 0.44
CLDN3O15551 AC106028.4-201ENST00000614509 607 ntBASIC17.81■□□□□ 0.44
CLDN3O15551 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC17.81■□□□□ 0.44
CLDN3O15551 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CLDN3O15551 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLDN3O15551 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC17.81■□□□□ 0.44
CLDN3O15551 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC17.81■□□□□ 0.44
CLDN3O15551 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC17.81■□□□□ 0.44
CLDN3O15551 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC17.81■□□□□ 0.44
CLDN3O15551 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
CLDN3O15551 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLDN3O15551 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLDN3O15551 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
CLDN3O15551 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLDN3O15551 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLDN3O15551 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC17.81■□□□□ 0.44
CLDN3O15551 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
CLDN3O15551 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC17.81■□□□□ 0.44
CLDN3O15551 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC17.81■□□□□ 0.44
CLDN3O15551 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC17.81■□□□□ 0.44
CLDN3O15551 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC17.81■□□□□ 0.44
CLDN3O15551 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLDN3O15551 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLDN3O15551 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CLDN3O15551 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC17.8■□□□□ 0.44
CLDN3O15551 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC17.8■□□□□ 0.44
CLDN3O15551 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CLDN3O15551 REXO1L8P-201ENST00000604378 1897 ntBASIC17.8■□□□□ 0.44
CLDN3O15551 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
CLDN3O15551 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CLDN3O15551 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CLDN3O15551 AC008741.2-201ENST00000612792 3115 ntBASIC17.8■□□□□ 0.44
CLDN3O15551 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CLDN3O15551 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CLDN3O15551 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms