Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 AKR1C7P-201ENST00000305623 895 ntBASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 CYB561-216ENST00000582297 897 ntTSL 3 BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
TRIM49D1C9J1S8 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC16.39■□□□□ 0.22
TRIM49D1C9J1S8 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.22
TRIM49D1C9J1S8 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 AC092919.2-201ENST00000623631 1645 ntBASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 TSPY19P-201ENST00000418461 509 ntBASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 TSPY18P-201ENST00000441642 509 ntBASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 AC136632.2-201ENST00000512891 861 ntBASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 AC091304.2-201ENST00000564639 760 ntBASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 AC008667.4-201ENST00000607370 168 ntBASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM49D1C9J1S8 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM49D1C9J1S8 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM49D1C9J1S8 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
TRIM49D1C9J1S8 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM49D1C9J1S8 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
TRIM49D1C9J1S8 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM49D1C9J1S8 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM49D1C9J1S8 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.38■□□□□ 0.21
TRIM49D1C9J1S8 U82695.1-201ENST00000635752 1889 ntBASIC16.38■□□□□ 0.21
TRIM49D1C9J1S8 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
TRIM49D1C9J1S8 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM49D1C9J1S8 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM49D1C9J1S8 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
TRIM49D1C9J1S8 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
TRIM49D1C9J1S8 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.38■□□□□ 0.21
TRIM49D1C9J1S8 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16.38■□□□□ 0.21
TRIM49D1C9J1S8 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC16.38■□□□□ 0.21
TRIM49D1C9J1S8 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms