Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 AC004870.1-201ENST00000315132 882 ntBASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 HAUS4P1-201ENST00000406739 1145 ntBASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 FAAHP1-202ENST00000446499 1238 ntBASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 HS6ST1P1-201ENST00000481504 1234 ntBASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 RNA5SP419-201ENST00000515908 135 ntBASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 CFL1-202ENST00000524553 860 ntTSL 2 BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 STK24-203ENST00000397517 4578 ntTSL 2 BASIC17.06■□□□□ 0.32
PCDHA3Q9Y5H8 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 AC092850.2-201ENST00000623821 2697 ntBASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 AC073347.1-201ENST00000421633 2643 ntBASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 FIS1-203ENST00000442303 631 ntTSL 3 BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 IGHV3-22-201ENST00000520721 359 ntBASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 IRF5-214ENST00000613821 595 ntTSL 5 BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 AC010507.1-201ENST00000633895 436 ntBASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
PCDHA3Q9Y5H8 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
PCDHA3Q9Y5H8 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC17.04■□□□□ 0.32
PCDHA3Q9Y5H8 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
PCDHA3Q9Y5H8 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PCDHA3Q9Y5H8 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PCDHA3Q9Y5H8 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDHA3Q9Y5H8 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PCDHA3Q9Y5H8 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
PCDHA3Q9Y5H8 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
PCDHA3Q9Y5H8 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms