Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AP001094.4-201ENST00000579008 2176 ntBASIC20.71■□□□□ 0.91
SHANK3Q9BYB0 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SHANK3Q9BYB0 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SHANK3Q9BYB0 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SHANK3Q9BYB0 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC20.71■□□□□ 0.91
SHANK3Q9BYB0 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC20.7■□□□□ 0.91
SHANK3Q9BYB0 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHANK3Q9BYB0 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHANK3Q9BYB0 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC20.7■□□□□ 0.9
SHANK3Q9BYB0 AC093433.1-201ENST00000458048 571 ntBASIC20.7■□□□□ 0.9
SHANK3Q9BYB0 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC20.7■□□□□ 0.9
SHANK3Q9BYB0 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SHANK3Q9BYB0 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC20.7■□□□□ 0.9
SHANK3Q9BYB0 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC20.7■□□□□ 0.9
SHANK3Q9BYB0 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHANK3Q9BYB0 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
SHANK3Q9BYB0 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
SHANK3Q9BYB0 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHANK3Q9BYB0 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHANK3Q9BYB0 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHANK3Q9BYB0 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SHANK3Q9BYB0 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHANK3Q9BYB0 LOX-206ENST00000639739 1626 ntTSL 5 BASIC20.7■□□□□ 0.9
SHANK3Q9BYB0 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC20.7■□□□□ 0.9
SHANK3Q9BYB0 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHANK3Q9BYB0 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHANK3Q9BYB0 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC20.7■□□□□ 0.9
SHANK3Q9BYB0 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHANK3Q9BYB0 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHANK3Q9BYB0 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHANK3Q9BYB0 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC20.7■□□□□ 0.9
SHANK3Q9BYB0 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC20.7■□□□□ 0.9
SHANK3Q9BYB0 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SHANK3Q9BYB0 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC20.7■□□□□ 0.9
SHANK3Q9BYB0 AC025279.2-201ENST00000569730 653 ntBASIC20.7■□□□□ 0.9
SHANK3Q9BYB0 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHANK3Q9BYB0 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC20.7■□□□□ 0.9
SHANK3Q9BYB0 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SHANK3Q9BYB0 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC20.7■□□□□ 0.9
SHANK3Q9BYB0 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SHANK3Q9BYB0 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC20.69■□□□□ 0.9
SHANK3Q9BYB0 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SHANK3Q9BYB0 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
SHANK3Q9BYB0 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
SHANK3Q9BYB0 HARS-202ENST00000415192 1401 ntTSL 2 BASIC20.69■□□□□ 0.9
SHANK3Q9BYB0 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SHANK3Q9BYB0 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SHANK3Q9BYB0 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SHANK3Q9BYB0 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SHANK3Q9BYB0 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC20.69■□□□□ 0.9
SHANK3Q9BYB0 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SHANK3Q9BYB0 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SHANK3Q9BYB0 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SHANK3Q9BYB0 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SHANK3Q9BYB0 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SHANK3Q9BYB0 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC20.69■□□□□ 0.9
SHANK3Q9BYB0 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC20.69■□□□□ 0.9
SHANK3Q9BYB0 AC016694.1-201ENST00000434179 700 ntBASIC20.69■□□□□ 0.9
SHANK3Q9BYB0 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
SHANK3Q9BYB0 AL590640.2-201ENST00000457038 527 ntBASIC20.69■□□□□ 0.9
SHANK3Q9BYB0 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SHANK3Q9BYB0 CMC2-214ENST00000565925 640 ntTSL 5 BASIC20.69■□□□□ 0.9
SHANK3Q9BYB0 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC20.69■□□□□ 0.9
SHANK3Q9BYB0 AC010328.2-201ENST00000597698 1111 ntBASIC20.69■□□□□ 0.9
SHANK3Q9BYB0 HADH-212ENST00000638621 741 ntTSL 5 BASIC20.69■□□□□ 0.9
SHANK3Q9BYB0 AP001282.1-201ENST00000531301 1499 ntBASIC20.69■□□□□ 0.9
SHANK3Q9BYB0 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SHANK3Q9BYB0 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC20.69■□□□□ 0.9
SHANK3Q9BYB0 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC20.69■□□□□ 0.9
SHANK3Q9BYB0 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.69■□□□□ 0.9
SHANK3Q9BYB0 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SHANK3Q9BYB0 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC20.68■□□□□ 0.9
SHANK3Q9BYB0 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC20.68■□□□□ 0.9
SHANK3Q9BYB0 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHANK3Q9BYB0 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC20.68■□□□□ 0.9
SHANK3Q9BYB0 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHANK3Q9BYB0 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
SHANK3Q9BYB0 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHANK3Q9BYB0 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC20.68■□□□□ 0.9
SHANK3Q9BYB0 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHANK3Q9BYB0 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SHANK3Q9BYB0 RNU1-114P-201ENST00000365297 166 ntBASIC20.68■□□□□ 0.9
SHANK3Q9BYB0 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHANK3Q9BYB0 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SHANK3Q9BYB0 GPAA1P2-201ENST00000417923 928 ntBASIC20.68■□□□□ 0.9
SHANK3Q9BYB0 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC20.68■□□□□ 0.9
SHANK3Q9BYB0 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC20.68■□□□□ 0.9
SHANK3Q9BYB0 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
SHANK3Q9BYB0 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC20.68■□□□□ 0.9
SHANK3Q9BYB0 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC20.68■□□□□ 0.9
SHANK3Q9BYB0 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC20.68■□□□□ 0.9
SHANK3Q9BYB0 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHANK3Q9BYB0 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SHANK3Q9BYB0 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHANK3Q9BYB0 AL607033.1-201ENST00000623900 1599 ntBASIC20.68■□□□□ 0.9
SHANK3Q9BYB0 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHANK3Q9BYB0 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC20.68■□□□□ 0.9
SHANK3Q9BYB0 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
SHANK3Q9BYB0 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SHANK3Q9BYB0 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms