Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RFX4Q33E94 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RFX4Q33E94 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
RFX4Q33E94 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC15.27■□□□□ 0.04
RFX4Q33E94 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RFX4Q33E94 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
RFX4Q33E94 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
RFX4Q33E94 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
RFX4Q33E94 NUS1P2-201ENST00000417358 873 ntBASIC15.27■□□□□ 0.04
RFX4Q33E94 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RFX4Q33E94 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
RFX4Q33E94 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RFX4Q33E94 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
RFX4Q33E94 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC15.27■□□□□ 0.04
RFX4Q33E94 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC15.27■□□□□ 0.04
RFX4Q33E94 FICD-205ENST00000552758 603 ntTSL 2 BASIC15.27■□□□□ 0.04
RFX4Q33E94 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC15.27■□□□□ 0.04
RFX4Q33E94 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
RFX4Q33E94 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
RFX4Q33E94 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
RFX4Q33E94 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.03
RFX4Q33E94 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC15.27■□□□□ 0.03
RFX4Q33E94 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
RFX4Q33E94 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RFX4Q33E94 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RFX4Q33E94 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RFX4Q33E94 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RFX4Q33E94 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RFX4Q33E94 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC15.27■□□□□ 0.03
RFX4Q33E94 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
RFX4Q33E94 PC-214ENST00000628663 1470 ntTSL 5 BASIC15.27■□□□□ 0.03
RFX4Q33E94 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
RFX4Q33E94 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
RFX4Q33E94 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RFX4Q33E94 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFX4Q33E94 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RFX4Q33E94 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFX4Q33E94 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC15.26■□□□□ 0.03
RFX4Q33E94 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFX4Q33E94 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC15.26■□□□□ 0.03
RFX4Q33E94 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
RFX4Q33E94 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
RFX4Q33E94 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC15.26■□□□□ 0.03
RFX4Q33E94 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC15.26■□□□□ 0.03
RFX4Q33E94 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFX4Q33E94 SSR4P1-203ENST00000599569 2260 ntBASIC15.26■□□□□ 0.03
RFX4Q33E94 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFX4Q33E94 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
RFX4Q33E94 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC15.26■□□□□ 0.03
RFX4Q33E94 KRT16P4-201ENST00000453883 522 ntBASIC15.26■□□□□ 0.03
RFX4Q33E94 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC15.26■□□□□ 0.03
RFX4Q33E94 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
RFX4Q33E94 AC069148.1-201ENST00000608741 768 ntBASIC15.26■□□□□ 0.03
RFX4Q33E94 AC010654.1-201ENST00000615722 808 ntBASIC15.26■□□□□ 0.03
RFX4Q33E94 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC15.26■□□□□ 0.03
RFX4Q33E94 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC15.26■□□□□ 0.03
RFX4Q33E94 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
RFX4Q33E94 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFX4Q33E94 GOLGA8DP-202ENST00000341390 2184 ntBASIC15.26■□□□□ 0.03
RFX4Q33E94 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFX4Q33E94 AC006486.2-201ENST00000624246 2199 ntBASIC15.26■□□□□ 0.03
RFX4Q33E94 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFX4Q33E94 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC15.26■□□□□ 0.03
RFX4Q33E94 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC15.26■□□□□ 0.03
RFX4Q33E94 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFX4Q33E94 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RFX4Q33E94 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RFX4Q33E94 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
RFX4Q33E94 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
RFX4Q33E94 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
RFX4Q33E94 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC15.26■□□□□ 0.03
RFX4Q33E94 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
RFX4Q33E94 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFX4Q33E94 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFX4Q33E94 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFX4Q33E94 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFX4Q33E94 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
RFX4Q33E94 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFX4Q33E94 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC15.25■□□□□ 0.03
RFX4Q33E94 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RFX4Q33E94 AP002414.2-201ENST00000591780 3365 ntBASIC15.25■□□□□ 0.03
RFX4Q33E94 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFX4Q33E94 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC15.25■□□□□ 0.03
RFX4Q33E94 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RFX4Q33E94 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
RFX4Q33E94 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
RFX4Q33E94 COPS8-203ENST00000409334 794 ntTSL 5 BASIC15.25■□□□□ 0.03
RFX4Q33E94 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC15.25■□□□□ 0.03
RFX4Q33E94 ATP5G2P1-201ENST00000433580 426 ntBASIC15.25■□□□□ 0.03
RFX4Q33E94 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
RFX4Q33E94 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC15.25■□□□□ 0.03
RFX4Q33E94 AC132008.2-207ENST00000454517 770 ntBASIC15.25■□□□□ 0.03
RFX4Q33E94 RMI2-205ENST00000576027 818 ntTSL 2 BASIC15.25■□□□□ 0.03
RFX4Q33E94 MIR4492-201ENST00000581627 80 ntBASIC15.25■□□□□ 0.03
RFX4Q33E94 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC15.25■□□□□ 0.03
RFX4Q33E94 AC064862.7-201ENST00000604520 867 ntBASIC15.25■□□□□ 0.03
RFX4Q33E94 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
RFX4Q33E94 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
RFX4Q33E94 PGM5P2-202ENST00000637225 1043 ntBASIC15.25■□□□□ 0.03
RFX4Q33E94 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms