Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SHMT2P34897 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
SHMT2P34897 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHMT2P34897 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHMT2P34897 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHMT2P34897 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
SHMT2P34897 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHMT2P34897 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHMT2P34897 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SHMT2P34897 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC16.05■□□□□ 0.16
SHMT2P34897 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHMT2P34897 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.04■□□□□ 0.16
SHMT2P34897 AL031731.1-201ENST00000642131 2094 ntBASIC16.04■□□□□ 0.16
SHMT2P34897 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SHMT2P34897 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHMT2P34897 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
SHMT2P34897 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHMT2P34897 HLA-A-202ENST00000376806 1854 ntBASIC16.04■□□□□ 0.16
SHMT2P34897 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHMT2P34897 AC004461.1-201ENST00000412461 403 ntBASIC16.04■□□□□ 0.16
SHMT2P34897 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SHMT2P34897 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC16.04■□□□□ 0.16
SHMT2P34897 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.04■□□□□ 0.16
SHMT2P34897 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
SHMT2P34897 IGHV3-62-201ENST00000520057 340 ntBASIC16.04■□□□□ 0.16
SHMT2P34897 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SHMT2P34897 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC16.04■□□□□ 0.16
SHMT2P34897 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHMT2P34897 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SHMT2P34897 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.04■□□□□ 0.16
SHMT2P34897 RNF34-208ENST00000555076 593 ntTSL 3 BASIC16.04■□□□□ 0.16
SHMT2P34897 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC16.04■□□□□ 0.16
SHMT2P34897 AC243562.1-201ENST00000560672 389 ntBASIC16.04■□□□□ 0.16
SHMT2P34897 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC16.04■□□□□ 0.16
SHMT2P34897 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
SHMT2P34897 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHMT2P34897 GPAA1P2-202ENST00000606848 1787 ntBASIC16.04■□□□□ 0.16
SHMT2P34897 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
SHMT2P34897 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHMT2P34897 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.04■□□□□ 0.16
SHMT2P34897 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
SHMT2P34897 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.04■□□□□ 0.16
SHMT2P34897 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SHMT2P34897 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHMT2P34897 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.04■□□□□ 0.16
SHMT2P34897 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHMT2P34897 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SHMT2P34897 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
SHMT2P34897 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHMT2P34897 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.04■□□□□ 0.16
SHMT2P34897 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SHMT2P34897 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
SHMT2P34897 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.04■□□□□ 0.16
SHMT2P34897 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SHMT2P34897 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.04■□□□□ 0.16
SHMT2P34897 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.03■□□□□ 0.16
SHMT2P34897 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHMT2P34897 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHMT2P34897 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.03■□□□□ 0.16
SHMT2P34897 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHMT2P34897 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHMT2P34897 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
SHMT2P34897 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SHMT2P34897 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SHMT2P34897 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
SHMT2P34897 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHMT2P34897 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHMT2P34897 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SHMT2P34897 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC16.03■□□□□ 0.16
SHMT2P34897 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC16.03■□□□□ 0.16
SHMT2P34897 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SHMT2P34897 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC16.03■□□□□ 0.16
SHMT2P34897 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHMT2P34897 AL592309.1-201ENST00000443127 649 ntBASIC16.03■□□□□ 0.16
SHMT2P34897 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC16.03■□□□□ 0.16
SHMT2P34897 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC16.03■□□□□ 0.16
SHMT2P34897 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC16.03■□□□□ 0.16
SHMT2P34897 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHMT2P34897 KRT8P23-201ENST00000560090 1207 ntBASIC16.03■□□□□ 0.16
SHMT2P34897 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC16.03■□□□□ 0.16
SHMT2P34897 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHMT2P34897 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.03■□□□□ 0.16
SHMT2P34897 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SHMT2P34897 AC008267.7-201ENST00000624570 1194 ntBASIC16.03■□□□□ 0.16
SHMT2P34897 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SHMT2P34897 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SHMT2P34897 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHMT2P34897 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SHMT2P34897 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
SHMT2P34897 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHMT2P34897 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
SHMT2P34897 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
SHMT2P34897 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.03■□□□□ 0.16
SHMT2P34897 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.03■□□□□ 0.16
SHMT2P34897 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHMT2P34897 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHMT2P34897 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.03■□□□□ 0.16
SHMT2P34897 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC16.03■□□□□ 0.16
SHMT2P34897 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.03■□□□□ 0.16
SHMT2P34897 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms