Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC14.99□□□□□ -0.01
MSX1P28360 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSX1P28360 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSX1P28360 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
MSX1P28360 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC14.99□□□□□ -0.01
MSX1P28360 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSX1P28360 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
MSX1P28360 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC14.99□□□□□ -0.01
MSX1P28360 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
MSX1P28360 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC14.99□□□□□ -0.01
MSX1P28360 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC14.99□□□□□ -0.01
MSX1P28360 AC092171.3-201ENST00000610122 2651 ntBASIC14.99□□□□□ -0.01
MSX1P28360 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
MSX1P28360 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
MSX1P28360 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC14.98□□□□□ -0.01
MSX1P28360 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
MSX1P28360 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
MSX1P28360 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
MSX1P28360 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC14.98□□□□□ -0.01
MSX1P28360 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
MSX1P28360 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSX1P28360 AC073439.1-201ENST00000624121 1774 ntBASIC14.98□□□□□ -0.01
MSX1P28360 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
MSX1P28360 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC14.98□□□□□ -0.01
MSX1P28360 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC14.98□□□□□ -0.01
MSX1P28360 CA12-203ENST00000422263 2556 ntTSL 2 BASIC14.98□□□□□ -0.01
MSX1P28360 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSX1P28360 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSX1P28360 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
MSX1P28360 AC005622.1-201ENST00000636801 1703 ntBASIC14.98□□□□□ -0.01
MSX1P28360 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC14.98□□□□□ -0.01
MSX1P28360 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC14.98□□□□□ -0.01
MSX1P28360 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC14.98□□□□□ -0.01
MSX1P28360 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSX1P28360 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSX1P28360 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
MSX1P28360 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSX1P28360 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC14.98□□□□□ -0.01
MSX1P28360 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC14.98□□□□□ -0.01
MSX1P28360 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSX1P28360 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
MSX1P28360 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSX1P28360 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
MSX1P28360 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
MSX1P28360 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC14.98□□□□□ -0.01
MSX1P28360 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC14.98□□□□□ -0.01
MSX1P28360 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC14.98□□□□□ -0.01
MSX1P28360 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC14.98□□□□□ -0.01
MSX1P28360 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC14.98□□□□□ -0.01
MSX1P28360 CNN2P2-201ENST00000443536 909 ntBASIC14.98□□□□□ -0.01
MSX1P28360 CNN2P3-201ENST00000450201 906 ntBASIC14.98□□□□□ -0.01
MSX1P28360 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSX1P28360 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC14.98□□□□□ -0.01
MSX1P28360 AC079140.1-201ENST00000508039 487 ntBASIC14.98□□□□□ -0.01
MSX1P28360 IGHV3-62-201ENST00000520057 340 ntBASIC14.98□□□□□ -0.01
MSX1P28360 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSX1P28360 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC14.98□□□□□ -0.01
MSX1P28360 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC14.98□□□□□ -0.01
MSX1P28360 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC14.98□□□□□ -0.01
MSX1P28360 AC138761.1-201ENST00000584393 385 ntBASIC14.98□□□□□ -0.01
MSX1P28360 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC14.98□□□□□ -0.01
MSX1P28360 AC027307.2-201ENST00000591252 911 ntBASIC14.98□□□□□ -0.01
MSX1P28360 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC14.98□□□□□ -0.01
MSX1P28360 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC14.98□□□□□ -0.01
MSX1P28360 AL136317.3-201ENST00000618497 906 ntBASIC14.98□□□□□ -0.01
MSX1P28360 AJ011932.1-201ENST00000621707 465 ntBASIC14.98□□□□□ -0.01
MSX1P28360 Z92544.3-201ENST00000624747 417 ntBASIC14.98□□□□□ -0.01
MSX1P28360 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
MSX1P28360 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.98□□□□□ -0.01
MSX1P28360 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSX1P28360 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC14.98□□□□□ -0.01
MSX1P28360 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
MSX1P28360 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC14.98□□□□□ -0.01
MSX1P28360 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
MSX1P28360 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC14.98□□□□□ -0.01
MSX1P28360 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC14.98□□□□□ -0.01
MSX1P28360 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC14.97□□□□□ -0.01
MSX1P28360 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSX1P28360 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
MSX1P28360 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC14.97□□□□□ -0.01
MSX1P28360 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC14.97□□□□□ -0.01
MSX1P28360 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSX1P28360 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSX1P28360 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
MSX1P28360 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC14.97□□□□□ -0.01
MSX1P28360 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
MSX1P28360 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC14.97□□□□□ -0.01
MSX1P28360 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC14.97□□□□□ -0.01
MSX1P28360 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSX1P28360 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSX1P28360 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
MSX1P28360 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC14.97□□□□□ -0.01
MSX1P28360 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSX1P28360 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSX1P28360 AC005237.2-201ENST00000434368 219 ntBASIC14.97□□□□□ -0.01
MSX1P28360 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
MSX1P28360 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
MSX1P28360 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
MSX1P28360 AQP6-203ENST00000551733 849 ntTSL 3 BASIC14.97□□□□□ -0.01
MSX1P28360 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms