Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HOXC4P09017 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HOXC4P09017 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC15.82■□□□□ 0.12
HOXC4P09017 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HOXC4P09017 DFFBP1-201ENST00000433250 979 ntBASIC15.82■□□□□ 0.12
HOXC4P09017 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC15.82■□□□□ 0.12
HOXC4P09017 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC15.82■□□□□ 0.12
HOXC4P09017 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
HOXC4P09017 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC15.82■□□□□ 0.12
HOXC4P09017 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC15.82■□□□□ 0.12
HOXC4P09017 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
HOXC4P09017 AC092337.1-201ENST00000568699 1129 ntBASIC15.82■□□□□ 0.12
HOXC4P09017 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HOXC4P09017 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
HOXC4P09017 AC074044.1-201ENST00000609673 707 ntBASIC15.82■□□□□ 0.12
HOXC4P09017 AL662799.1-202ENST00000614205 422 ntBASIC15.82■□□□□ 0.12
HOXC4P09017 AL358472.5-202ENST00000641448 1267 ntBASIC15.82■□□□□ 0.12
HOXC4P09017 AF228730.6-201ENST00000641497 218 ntBASIC15.82■□□□□ 0.12
HOXC4P09017 AC084121.3-201ENST00000641716 218 ntBASIC15.82■□□□□ 0.12
HOXC4P09017 AC105233.6-201ENST00000642093 218 ntBASIC15.82■□□□□ 0.12
HOXC4P09017 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HOXC4P09017 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HOXC4P09017 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HOXC4P09017 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC15.82■□□□□ 0.12
HOXC4P09017 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC15.82■□□□□ 0.12
HOXC4P09017 Z97205.2-201ENST00000564697 1639 ntBASIC15.82■□□□□ 0.12
HOXC4P09017 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HOXC4P09017 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HOXC4P09017 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
HOXC4P09017 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC15.82■□□□□ 0.12
HOXC4P09017 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
HOXC4P09017 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC15.82■□□□□ 0.12
HOXC4P09017 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC15.82■□□□□ 0.12
HOXC4P09017 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
HOXC4P09017 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC15.82■□□□□ 0.12
HOXC4P09017 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HOXC4P09017 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC15.81■□□□□ 0.12
HOXC4P09017 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
HOXC4P09017 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC4P09017 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC4P09017 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC4P09017 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC4P09017 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC4P09017 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC4P09017 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
HOXC4P09017 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC4P09017 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC4P09017 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC15.81■□□□□ 0.12
HOXC4P09017 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC4P09017 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC4P09017 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC4P09017 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC4P09017 MEP1AP4-201ENST00000423244 1087 ntBASIC15.81■□□□□ 0.12
HOXC4P09017 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC4P09017 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC4P09017 ELP6-209ENST00000446787 894 ntTSL 3 BASIC15.81■□□□□ 0.12
HOXC4P09017 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC4P09017 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC4P09017 AC093004.1-201ENST00000508850 424 ntBASIC15.81■□□□□ 0.12
HOXC4P09017 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
HOXC4P09017 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC15.81■□□□□ 0.12
HOXC4P09017 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
HOXC4P09017 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
HOXC4P09017 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC15.81■□□□□ 0.12
HOXC4P09017 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC15.81■□□□□ 0.12
HOXC4P09017 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC4P09017 SPIB-207ENST00000597855 564 ntTSL 4 BASIC15.81■□□□□ 0.12
HOXC4P09017 SRD5A3P1-201ENST00000603021 949 ntBASIC15.81■□□□□ 0.12
HOXC4P09017 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC15.81■□□□□ 0.12
HOXC4P09017 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
HOXC4P09017 AC004461.2-201ENST00000629517 803 ntBASIC15.81■□□□□ 0.12
HOXC4P09017 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
HOXC4P09017 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC4P09017 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC4P09017 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC4P09017 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC4P09017 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
HOXC4P09017 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC4P09017 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.8■□□□□ 0.12
HOXC4P09017 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC4P09017 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC4P09017 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.8■□□□□ 0.12
HOXC4P09017 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
HOXC4P09017 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC4P09017 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
HOXC4P09017 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC4P09017 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC4P09017 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC15.8■□□□□ 0.12
HOXC4P09017 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC15.8■□□□□ 0.12
HOXC4P09017 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC4P09017 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC4P09017 BNIP3P1-202ENST00000550043 1585 ntBASIC15.8■□□□□ 0.12
HOXC4P09017 ZBTB45P2-201ENST00000452245 1531 ntBASIC15.8■□□□□ 0.12
HOXC4P09017 AC092171.3-201ENST00000610122 2651 ntBASIC15.8■□□□□ 0.12
HOXC4P09017 AC011676.5-201ENST00000624864 2660 ntBASIC15.8■□□□□ 0.12
HOXC4P09017 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
HOXC4P09017 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC4P09017 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC4P09017 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HOXC4P09017 MIR648-201ENST00000385046 94 ntBASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms