Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC15.22■□□□□ 0.03
PRKNO60260 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC15.22■□□□□ 0.03
PRKNO60260 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC15.22■□□□□ 0.03
PRKNO60260 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
PRKNO60260 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC15.22■□□□□ 0.03
PRKNO60260 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC15.22■□□□□ 0.03
PRKNO60260 GATD1-206ENST00000526325 756 ntTSL 5 BASIC15.22■□□□□ 0.03
PRKNO60260 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC15.22■□□□□ 0.03
PRKNO60260 VPS29-207ENST00000549970 818 ntTSL 3 BASIC15.22■□□□□ 0.03
PRKNO60260 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
PRKNO60260 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PRKNO60260 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC15.22■□□□□ 0.03
PRKNO60260 AP001059.3-201ENST00000619053 235 ntBASIC15.22■□□□□ 0.03
PRKNO60260 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
PRKNO60260 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PRKNO60260 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PRKNO60260 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PRKNO60260 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PRKNO60260 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC15.22■□□□□ 0.03
PRKNO60260 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PRKNO60260 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
PRKNO60260 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
PRKNO60260 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC15.22■□□□□ 0.03
PRKNO60260 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PRKNO60260 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
PRKNO60260 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC15.22■□□□□ 0.03
PRKNO60260 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PRKNO60260 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
PRKNO60260 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PRKNO60260 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
PRKNO60260 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC15.22■□□□□ 0.03
PRKNO60260 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PRKNO60260 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
PRKNO60260 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PRKNO60260 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
PRKNO60260 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC15.21■□□□□ 0.03
PRKNO60260 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC15.21■□□□□ 0.03
PRKNO60260 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PRKNO60260 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PRKNO60260 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PRKNO60260 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC15.21■□□□□ 0.03
PRKNO60260 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
PRKNO60260 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
PRKNO60260 AP3S2-216ENST00000617003 1561 ntBASIC15.21■□□□□ 0.03
PRKNO60260 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC15.21■□□□□ 0.03
PRKNO60260 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PRKNO60260 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PRKNO60260 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PRKNO60260 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC15.21■□□□□ 0.03
PRKNO60260 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC15.21■□□□□ 0.03
PRKNO60260 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC15.21■□□□□ 0.03
PRKNO60260 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC15.21■□□□□ 0.03
PRKNO60260 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.21■□□□□ 0.03
PRKNO60260 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC15.21■□□□□ 0.03
PRKNO60260 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PRKNO60260 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
PRKNO60260 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC15.21■□□□□ 0.03
PRKNO60260 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC15.21■□□□□ 0.03
PRKNO60260 LSM12-202ENST00000585388 942 ntTSL 3 BASIC15.21■□□□□ 0.03
PRKNO60260 FHL2-212ENST00000607522 759 ntTSL 2 BASIC15.21■□□□□ 0.03
PRKNO60260 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC15.21■□□□□ 0.03
PRKNO60260 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PRKNO60260 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PRKNO60260 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PRKNO60260 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PRKNO60260 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC15.21■□□□□ 0.02
PRKNO60260 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
PRKNO60260 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
PRKNO60260 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
PRKNO60260 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
PRKNO60260 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC15.21■□□□□ 0.02
PRKNO60260 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
PRKNO60260 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
PRKNO60260 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PRKNO60260 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PRKNO60260 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
PRKNO60260 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.2■□□□□ 0.02
PRKNO60260 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
PRKNO60260 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
PRKNO60260 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PRKNO60260 AC008677.1-201ENST00000519230 1561 ntBASIC15.2■□□□□ 0.02
PRKNO60260 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PRKNO60260 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
PRKNO60260 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
PRKNO60260 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PRKNO60260 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PRKNO60260 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
PRKNO60260 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PRKNO60260 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC15.2■□□□□ 0.02
PRKNO60260 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC15.2■□□□□ 0.02
PRKNO60260 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PRKNO60260 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC15.2■□□□□ 0.02
PRKNO60260 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC15.2■□□□□ 0.02
PRKNO60260 AC025678.2-201ENST00000562061 970 ntBASIC15.2■□□□□ 0.02
PRKNO60260 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PRKNO60260 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC15.2■□□□□ 0.02
PRKNO60260 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC15.2■□□□□ 0.02
PRKNO60260 SPTSSB-204ENST00000617024 1292 ntBASIC15.2■□□□□ 0.02
PRKNO60260 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC15.2■□□□□ 0.02
PRKNO60260 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 46.8 ms