Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
TRIM49D1C9J1S8 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC16.43■□□□□ 0.22
TRIM49D1C9J1S8 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.43■□□□□ 0.22
TRIM49D1C9J1S8 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
TRIM49D1C9J1S8 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
TRIM49D1C9J1S8 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM49D1C9J1S8 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM49D1C9J1S8 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM49D1C9J1S8 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM49D1C9J1S8 AC092850.2-201ENST00000623821 2697 ntBASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 DFFB-203ENST00000341385 572 ntTSL 5 BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 DUSP5P1-201ENST00000441325 1139 ntBASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 KRT18P35-201ENST00000510488 1269 ntBASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 NMU-205ENST00000511469 756 ntTSL 3 BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC16.42■□□□□ 0.22
TRIM49D1C9J1S8 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 LCK-206ENST00000373564 2137 ntTSL 5 BASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 AC073621.1-201ENST00000392730 636 ntBASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 KRT18P27-201ENST00000427733 1299 ntBASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 AL160237.2-201ENST00000556165 472 ntBASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
TRIM49D1C9J1S8 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 AC012569.1-201ENST00000591191 1524 ntBASIC16.4■□□□□ 0.22
TRIM49D1C9J1S8 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms