Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 PP7080-204ENST00000510714 601 ntTSL 3 BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 THTPA-204ENST00000554970 569 ntTSL 4 BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 THTPA-206ENST00000556015 535 ntTSL 3 BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 AC010507.1-201ENST00000633895 436 ntBASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC14.81□□□□□ -0.04
HIF3AQ9Y2N7 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 AC079776.4-201ENST00000511039 504 ntBASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 CBFB-203ENST00000561924 584 ntTSL 5 BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
HIF3AQ9Y2N7 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 FIS1-203ENST00000442303 631 ntTSL 3 BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 Z83851.2-201ENST00000609564 659 ntBASIC14.79□□□□□ -0.04
HIF3AQ9Y2N7 PGR-209ENST00000617858 2816 ntTSL 5 BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms