Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 PAUPAR-201ENST00000630360 2965 ntBASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 KRT19P2-202ENST00000557173 1012 ntBASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 AC018845.2-201ENST00000568326 409 ntBASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 KLK8-205ENST00000593490 267 ntTSL 3 BASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 AL078644.1-201ENST00000609881 752 ntBASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VPS29Q9UBQ0 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
VPS29Q9UBQ0 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
VPS29Q9UBQ0 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
VPS29Q9UBQ0 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
VPS29Q9UBQ0 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.1
VPS29Q9UBQ0 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 LBH-204ENST00000406087 559 ntTSL 4 BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 AC007967.2-201ENST00000432613 625 ntBASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 KRT18P2-201ENST00000447938 1258 ntBASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 AC093724.1-201ENST00000448659 1027 ntBASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 RPL18-209ENST00000550645 463 ntTSL 5 BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 RPL18-214ENST00000552588 559 ntTSL 3 BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 CDC14C-201ENST00000428251 1719 ntBASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 FUK-207ENST00000571514 3054 ntTSL 2 BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 LINC02447-202ENST00000501888 2146 ntBASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
VPS29Q9UBQ0 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
VPS29Q9UBQ0 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS29Q9UBQ0 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.69■□□□□ 0.1
VPS29Q9UBQ0 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS29Q9UBQ0 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VPS29Q9UBQ0 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC15.69■□□□□ 0.1
VPS29Q9UBQ0 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15.69■□□□□ 0.1
VPS29Q9UBQ0 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
VPS29Q9UBQ0 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.69■□□□□ 0.1
VPS29Q9UBQ0 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VPS29Q9UBQ0 AC132872.4-202ENST00000622924 2756 ntBASIC15.69■□□□□ 0.1
VPS29Q9UBQ0 BEX3-201ENST00000361298 921 ntTSL 2 BASIC15.69■□□□□ 0.1
VPS29Q9UBQ0 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms