Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
VPS54Q9P1Q0 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC18.83■□□□□ 0.61
VPS54Q9P1Q0 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
VPS54Q9P1Q0 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS54Q9P1Q0 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS54Q9P1Q0 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS54Q9P1Q0 AC026691.1-201ENST00000602502 2017 ntBASIC18.83■□□□□ 0.61
VPS54Q9P1Q0 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS54Q9P1Q0 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
VPS54Q9P1Q0 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS54Q9P1Q0 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VPS54Q9P1Q0 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC18.83■□□□□ 0.6
VPS54Q9P1Q0 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VPS54Q9P1Q0 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC18.83■□□□□ 0.6
VPS54Q9P1Q0 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS54Q9P1Q0 PTMS-202ENST00000389462 773 ntTSL 2 BASIC18.83■□□□□ 0.6
VPS54Q9P1Q0 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC18.83■□□□□ 0.6
VPS54Q9P1Q0 RPS8P6-201ENST00000426177 609 ntBASIC18.83■□□□□ 0.6
VPS54Q9P1Q0 FAM58DP-201ENST00000428076 619 ntBASIC18.83■□□□□ 0.6
VPS54Q9P1Q0 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC18.83■□□□□ 0.6
VPS54Q9P1Q0 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VPS54Q9P1Q0 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC18.83■□□□□ 0.6
VPS54Q9P1Q0 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC18.83■□□□□ 0.6
VPS54Q9P1Q0 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
VPS54Q9P1Q0 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC18.83■□□□□ 0.6
VPS54Q9P1Q0 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC18.83■□□□□ 0.6
VPS54Q9P1Q0 AL596442.2-201ENST00000610240 980 ntBASIC18.83■□□□□ 0.6
VPS54Q9P1Q0 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC18.83■□□□□ 0.6
VPS54Q9P1Q0 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VPS54Q9P1Q0 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS54Q9P1Q0 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS54Q9P1Q0 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS54Q9P1Q0 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC18.83■□□□□ 0.6
VPS54Q9P1Q0 PCDHA1-201ENST00000378133 2726 ntBASIC18.83■□□□□ 0.6
VPS54Q9P1Q0 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
VPS54Q9P1Q0 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS54Q9P1Q0 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS54Q9P1Q0 BLK-205ENST00000529894 2017 ntTSL 5 BASIC18.83■□□□□ 0.6
VPS54Q9P1Q0 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC18.83■□□□□ 0.6
VPS54Q9P1Q0 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 AC005237.2-201ENST00000434368 219 ntBASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 AP006288.1-201ENST00000446065 395 ntBASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 AP000344.2-201ENST00000512987 629 ntBASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 SPTSSB-204ENST00000617024 1292 ntBASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS54Q9P1Q0 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 AL627223.1-201ENST00000416693 442 ntBASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms