Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
NDE1Q9NXR1 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
NDE1Q9NXR1 LGALS8-AS1-201ENST00000487567 1457 ntBASIC15.92■□□□□ 0.14
NDE1Q9NXR1 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
NDE1Q9NXR1 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
NDE1Q9NXR1 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
NDE1Q9NXR1 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
NDE1Q9NXR1 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
NDE1Q9NXR1 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
NDE1Q9NXR1 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
NDE1Q9NXR1 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
NDE1Q9NXR1 BX664615.1-201ENST00000443558 458 ntBASIC15.92■□□□□ 0.14
NDE1Q9NXR1 AC112907.2-201ENST00000448639 330 ntBASIC15.92■□□□□ 0.14
NDE1Q9NXR1 TSPY15P-201ENST00000457163 923 ntBASIC15.92■□□□□ 0.14
NDE1Q9NXR1 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
NDE1Q9NXR1 YBX1P2-201ENST00000489612 999 ntBASIC15.92■□□□□ 0.14
NDE1Q9NXR1 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC15.92■□□□□ 0.14
NDE1Q9NXR1 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC15.92■□□□□ 0.14
NDE1Q9NXR1 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
NDE1Q9NXR1 MIR4497-201ENST00000583208 89 ntBASIC15.92■□□□□ 0.14
NDE1Q9NXR1 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC15.92■□□□□ 0.14
NDE1Q9NXR1 SIGLEC29P-201ENST00000599873 1114 ntBASIC15.92■□□□□ 0.14
NDE1Q9NXR1 AC145285.6-201ENST00000604632 637 ntBASIC15.92■□□□□ 0.14
NDE1Q9NXR1 AP006294.2-201ENST00000641667 209 ntBASIC15.92■□□□□ 0.14
NDE1Q9NXR1 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
NDE1Q9NXR1 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC15.92■□□□□ 0.14
NDE1Q9NXR1 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
NDE1Q9NXR1 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC15.92■□□□□ 0.14
NDE1Q9NXR1 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
NDE1Q9NXR1 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
NDE1Q9NXR1 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC15.92■□□□□ 0.14
NDE1Q9NXR1 CICP4-201ENST00000447359 2812 ntBASIC15.92■□□□□ 0.14
NDE1Q9NXR1 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
NDE1Q9NXR1 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
NDE1Q9NXR1 AC104581.4-201ENST00000623126 3052 ntBASIC15.92■□□□□ 0.14
NDE1Q9NXR1 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
NDE1Q9NXR1 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
NDE1Q9NXR1 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC15.92■□□□□ 0.14
NDE1Q9NXR1 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC15.92■□□□□ 0.14
NDE1Q9NXR1 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC15.92■□□□□ 0.14
NDE1Q9NXR1 SSR4P1-203ENST00000599569 2260 ntBASIC15.92■□□□□ 0.14
NDE1Q9NXR1 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
NDE1Q9NXR1 PMPCAP1-201ENST00000508114 1576 ntBASIC15.92■□□□□ 0.14
NDE1Q9NXR1 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 GPAA1P2-202ENST00000606848 1787 ntBASIC15.91■□□□□ 0.14
NDE1Q9NXR1 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 AL845331.1-201ENST00000424978 1190 ntBASIC15.91■□□□□ 0.14
NDE1Q9NXR1 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 S100A2-206ENST00000497140 697 ntTSL 2 BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 AC016027.1-202ENST00000607927 1699 ntBASIC15.91■□□□□ 0.14
NDE1Q9NXR1 CICP24-201ENST00000605464 2705 ntBASIC15.91■□□□□ 0.14
NDE1Q9NXR1 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 GSN-203ENST00000373808 2664 ntTSL 2 BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
NDE1Q9NXR1 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
NDE1Q9NXR1 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
NDE1Q9NXR1 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
NDE1Q9NXR1 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
NDE1Q9NXR1 AC097376.2-205ENST00000610159 5334 ntBASIC15.9■□□□□ 0.14
NDE1Q9NXR1 AL359258.3-201ENST00000622910 2331 ntBASIC15.9■□□□□ 0.14
NDE1Q9NXR1 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC15.9■□□□□ 0.14
NDE1Q9NXR1 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
NDE1Q9NXR1 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC15.9■□□□□ 0.14
NDE1Q9NXR1 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC15.9■□□□□ 0.14
NDE1Q9NXR1 AC007292.2-201ENST00000593524 1812 ntBASIC15.9■□□□□ 0.14
NDE1Q9NXR1 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
NDE1Q9NXR1 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
NDE1Q9NXR1 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC15.9■□□□□ 0.14
NDE1Q9NXR1 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms