Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC14.53□□□□□ -0.08
MMP28Q9H239 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
MMP28Q9H239 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MMP28Q9H239 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MMP28Q9H239 GSN-206ENST00000394353 2311 ntTSL 2 BASIC14.53□□□□□ -0.08
MMP28Q9H239 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
MMP28Q9H239 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
MMP28Q9H239 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
MMP28Q9H239 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
MMP28Q9H239 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
MMP28Q9H239 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
MMP28Q9H239 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
MMP28Q9H239 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC14.52□□□□□ -0.08
MMP28Q9H239 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
MMP28Q9H239 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC14.52□□□□□ -0.08
MMP28Q9H239 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
MMP28Q9H239 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC14.52□□□□□ -0.08
MMP28Q9H239 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
MMP28Q9H239 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
MMP28Q9H239 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC14.52□□□□□ -0.08
MMP28Q9H239 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC14.52□□□□□ -0.08
MMP28Q9H239 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC14.52□□□□□ -0.08
MMP28Q9H239 KRT18P1-202ENST00000452408 1331 ntBASIC14.52□□□□□ -0.08
MMP28Q9H239 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC14.52□□□□□ -0.08
MMP28Q9H239 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
MMP28Q9H239 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.09
MMP28Q9H239 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
MMP28Q9H239 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
MMP28Q9H239 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
MMP28Q9H239 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC14.52□□□□□ -0.09
MMP28Q9H239 AC246785.2-201ENST00000432512 513 ntBASIC14.52□□□□□ -0.09
MMP28Q9H239 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC14.52□□□□□ -0.09
MMP28Q9H239 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
MMP28Q9H239 TMED1-207ENST00000591695 809 ntTSL 5 BASIC14.52□□□□□ -0.09
MMP28Q9H239 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
MMP28Q9H239 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
MMP28Q9H239 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
MMP28Q9H239 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
MMP28Q9H239 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
MMP28Q9H239 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
MMP28Q9H239 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
MMP28Q9H239 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
MMP28Q9H239 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
MMP28Q9H239 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
MMP28Q9H239 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
MMP28Q9H239 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
MMP28Q9H239 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
MMP28Q9H239 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC14.52□□□□□ -0.09
MMP28Q9H239 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
MMP28Q9H239 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
MMP28Q9H239 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
MMP28Q9H239 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
MMP28Q9H239 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
MMP28Q9H239 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC14.51□□□□□ -0.09
MMP28Q9H239 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC14.51□□□□□ -0.09
MMP28Q9H239 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC14.51□□□□□ -0.09
MMP28Q9H239 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
MMP28Q9H239 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
MMP28Q9H239 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
MMP28Q9H239 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC14.51□□□□□ -0.09
MMP28Q9H239 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
MMP28Q9H239 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
MMP28Q9H239 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
MMP28Q9H239 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
MMP28Q9H239 AC002558.1-201ENST00000488906 803 ntBASIC14.51□□□□□ -0.09
MMP28Q9H239 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC14.51□□□□□ -0.09
MMP28Q9H239 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC14.51□□□□□ -0.09
MMP28Q9H239 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
MMP28Q9H239 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC14.51□□□□□ -0.09
MMP28Q9H239 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
MMP28Q9H239 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
MMP28Q9H239 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC14.51□□□□□ -0.09
MMP28Q9H239 AL353801.3-201ENST00000609898 542 ntBASIC14.51□□□□□ -0.09
MMP28Q9H239 AL691432.3-201ENST00000621860 400 ntBASIC14.51□□□□□ -0.09
MMP28Q9H239 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC14.51□□□□□ -0.09
MMP28Q9H239 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
MMP28Q9H239 SSR4P1-203ENST00000599569 2260 ntBASIC14.51□□□□□ -0.09
MMP28Q9H239 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC14.51□□□□□ -0.09
MMP28Q9H239 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
MMP28Q9H239 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
MMP28Q9H239 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
MMP28Q9H239 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
MMP28Q9H239 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
MMP28Q9H239 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
MMP28Q9H239 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
MMP28Q9H239 PC-208ENST00000529047 1607 ntTSL 3 BASIC14.51□□□□□ -0.09
MMP28Q9H239 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC14.51□□□□□ -0.09
MMP28Q9H239 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
MMP28Q9H239 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
MMP28Q9H239 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
MMP28Q9H239 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC14.51□□□□□ -0.09
MMP28Q9H239 TBC1D3P5-201ENST00000579401 1545 ntBASIC14.51□□□□□ -0.09
MMP28Q9H239 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
MMP28Q9H239 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
MMP28Q9H239 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
MMP28Q9H239 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
MMP28Q9H239 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
MMP28Q9H239 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
MMP28Q9H239 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC14.5□□□□□ -0.09
MMP28Q9H239 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC14.5□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms