Protein–RNA interactions for Protein: Q99986

VRK1, Serine/threonine-protein kinase VRK1, humanhuman

Predicted RBP Predictions only

Length 396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1Q99986 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VRK1Q99986 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VRK1Q99986 AC024909.3-201ENST00000611513 2257 ntBASIC14.54□□□□□ -0.08
VRK1Q99986 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VRK1Q99986 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VRK1Q99986 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VRK1Q99986 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VRK1Q99986 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VRK1Q99986 AC092171.3-201ENST00000610122 2651 ntBASIC14.54□□□□□ -0.08
VRK1Q99986 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VRK1Q99986 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VRK1Q99986 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
VRK1Q99986 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
VRK1Q99986 NEK7-201ENST00000367383 586 ntTSL 2 BASIC14.54□□□□□ -0.08
VRK1Q99986 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VRK1Q99986 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
VRK1Q99986 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
VRK1Q99986 HTR5BP-201ENST00000430851 1154 ntBASIC14.54□□□□□ -0.08
VRK1Q99986 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
VRK1Q99986 DNAJB3-202ENST00000449667 1266 ntBASIC14.54□□□□□ -0.08
VRK1Q99986 CEND1P1-201ENST00000451006 455 ntBASIC14.54□□□□□ -0.08
VRK1Q99986 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC14.54□□□□□ -0.08
VRK1Q99986 AC074386.1-202ENST00000463561 864 ntBASIC14.54□□□□□ -0.08
VRK1Q99986 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC14.54□□□□□ -0.08
VRK1Q99986 CFL1-202ENST00000524553 860 ntTSL 2 BASIC14.54□□□□□ -0.08
VRK1Q99986 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC14.54□□□□□ -0.08
VRK1Q99986 AP001160.2-201ENST00000596071 487 ntBASIC14.54□□□□□ -0.08
VRK1Q99986 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC14.54□□□□□ -0.08
VRK1Q99986 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VRK1Q99986 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
VRK1Q99986 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
VRK1Q99986 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
VRK1Q99986 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VRK1Q99986 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC14.54□□□□□ -0.08
VRK1Q99986 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC14.54□□□□□ -0.08
VRK1Q99986 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VRK1Q99986 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VRK1Q99986 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC14.54□□□□□ -0.08
VRK1Q99986 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VRK1Q99986 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC14.54□□□□□ -0.08
VRK1Q99986 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VRK1Q99986 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
VRK1Q99986 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
VRK1Q99986 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VRK1Q99986 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VRK1Q99986 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC14.54□□□□□ -0.08
VRK1Q99986 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VRK1Q99986 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
VRK1Q99986 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
VRK1Q99986 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
VRK1Q99986 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VRK1Q99986 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
VRK1Q99986 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VRK1Q99986 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
VRK1Q99986 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VRK1Q99986 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC14.53□□□□□ -0.08
VRK1Q99986 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
VRK1Q99986 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VRK1Q99986 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC14.53□□□□□ -0.08
VRK1Q99986 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC14.53□□□□□ -0.08
VRK1Q99986 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VRK1Q99986 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC14.53□□□□□ -0.08
VRK1Q99986 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VRK1Q99986 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC14.53□□□□□ -0.08
VRK1Q99986 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VRK1Q99986 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC14.53□□□□□ -0.08
VRK1Q99986 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VRK1Q99986 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VRK1Q99986 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VRK1Q99986 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC14.53□□□□□ -0.08
VRK1Q99986 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VRK1Q99986 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VRK1Q99986 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
VRK1Q99986 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC14.53□□□□□ -0.08
VRK1Q99986 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
VRK1Q99986 REM2-202ENST00000536884 1331 ntTSL 2 BASIC14.53□□□□□ -0.08
VRK1Q99986 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VRK1Q99986 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
VRK1Q99986 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VRK1Q99986 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VRK1Q99986 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC14.53□□□□□ -0.08
VRK1Q99986 RHOQP3-201ENST00000437982 621 ntBASIC14.53□□□□□ -0.08
VRK1Q99986 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC14.53□□□□□ -0.08
VRK1Q99986 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VRK1Q99986 AC087163.2-201ENST00000457299 853 ntBASIC14.53□□□□□ -0.08
VRK1Q99986 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC14.53□□□□□ -0.08
VRK1Q99986 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC14.53□□□□□ -0.08
VRK1Q99986 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC14.53□□□□□ -0.08
VRK1Q99986 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC14.53□□□□□ -0.08
VRK1Q99986 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC14.53□□□□□ -0.08
VRK1Q99986 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VRK1Q99986 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
VRK1Q99986 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VRK1Q99986 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VRK1Q99986 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VRK1Q99986 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
VRK1Q99986 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VRK1Q99986 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC14.53□□□□□ -0.08
VRK1Q99986 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VRK1Q99986 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms