Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 AC091812.3-201ENST00000621362 345 ntBASIC21.29■■□□□ 1
ABCA3Q99758 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC21.29■■□□□ 1
ABCA3Q99758 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC21.28■■□□□ 1
ABCA3Q99758 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
ABCA3Q99758 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
ABCA3Q99758 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
ABCA3Q99758 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC21.28■■□□□ 1
ABCA3Q99758 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
ABCA3Q99758 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC21.28■■□□□ 1
ABCA3Q99758 NUS1P3-201ENST00000423502 862 ntBASIC21.28■■□□□ 1
ABCA3Q99758 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC21.28■■□□□ 1
ABCA3Q99758 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
ABCA3Q99758 RPS2P36-201ENST00000456516 831 ntBASIC21.28■■□□□ 1
ABCA3Q99758 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
ABCA3Q99758 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC21.28■■□□□ 1
ABCA3Q99758 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC21.28■■□□□ 1
ABCA3Q99758 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC21.28■■□□□ 1
ABCA3Q99758 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC21.28■■□□□ 1
ABCA3Q99758 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC21.28■■□□□ 1
ABCA3Q99758 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
ABCA3Q99758 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC21.28■■□□□ 1
ABCA3Q99758 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
ABCA3Q99758 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC21.27■■□□□ 1
ABCA3Q99758 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
ABCA3Q99758 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
ABCA3Q99758 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC21.27■■□□□ 1
ABCA3Q99758 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC21.27■■□□□ 1
ABCA3Q99758 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC21.27■■□□□ 1
ABCA3Q99758 AC138627.1-207ENST00000641560 1006 ntBASIC21.27■■□□□ 1
ABCA3Q99758 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC21.27■■□□□ 1
ABCA3Q99758 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
ABCA3Q99758 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
ABCA3Q99758 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
ABCA3Q99758 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC21.27■■□□□ 1
ABCA3Q99758 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC21.27■■□□□ 1
ABCA3Q99758 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC21.27■■□□□ 1
ABCA3Q99758 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC21.27■□□□□ 0.99
ABCA3Q99758 AHCYP2-201ENST00000430630 1300 ntBASIC21.27■□□□□ 0.99
ABCA3Q99758 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
ABCA3Q99758 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
ABCA3Q99758 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC21.27■□□□□ 0.99
ABCA3Q99758 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC21.27■□□□□ 0.99
ABCA3Q99758 AC006001.1-201ENST00000325130 474 ntBASIC21.26■□□□□ 0.99
ABCA3Q99758 ACTBP8-201ENST00000403258 1108 ntBASIC21.26■□□□□ 0.99
ABCA3Q99758 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC21.26■□□□□ 0.99
ABCA3Q99758 AC020914.3-201ENST00000594712 304 ntBASIC21.26■□□□□ 0.99
ABCA3Q99758 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC21.26■□□□□ 0.99
ABCA3Q99758 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
ABCA3Q99758 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
ABCA3Q99758 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC21.26■□□□□ 0.99
ABCA3Q99758 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
ABCA3Q99758 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC21.26■□□□□ 0.99
ABCA3Q99758 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
ABCA3Q99758 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
ABCA3Q99758 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
ABCA3Q99758 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC21.26■□□□□ 0.99
ABCA3Q99758 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
ABCA3Q99758 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
ABCA3Q99758 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
ABCA3Q99758 BTBD6P1-201ENST00000412176 1267 ntBASIC21.26■□□□□ 0.99
ABCA3Q99758 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC21.26■□□□□ 0.99
ABCA3Q99758 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC21.26■□□□□ 0.99
ABCA3Q99758 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC21.26■□□□□ 0.99
ABCA3Q99758 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC21.26■□□□□ 0.99
ABCA3Q99758 SNX1-214ENST00000625244 324 ntTSL 5 BASIC21.26■□□□□ 0.99
ABCA3Q99758 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
ABCA3Q99758 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
ABCA3Q99758 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
ABCA3Q99758 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC21.26■□□□□ 0.99
ABCA3Q99758 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC21.26■□□□□ 0.99
ABCA3Q99758 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ABCA3Q99758 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC21.25■□□□□ 0.99
ABCA3Q99758 PCDHB18P-201ENST00000524813 2368 ntBASIC21.25■□□□□ 0.99
ABCA3Q99758 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ABCA3Q99758 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC21.25■□□□□ 0.99
ABCA3Q99758 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
ABCA3Q99758 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC21.25■□□□□ 0.99
ABCA3Q99758 TMEM198B-204ENST00000484016 896 ntBASIC21.25■□□□□ 0.99
ABCA3Q99758 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ABCA3Q99758 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ABCA3Q99758 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
ABCA3Q99758 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ABCA3Q99758 AMT-233ENST00000636522 1620 ntTSL 2 BASIC21.25■□□□□ 0.99
ABCA3Q99758 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ABCA3Q99758 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC21.25■□□□□ 0.99
ABCA3Q99758 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ABCA3Q99758 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC21.25■□□□□ 0.99
ABCA3Q99758 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC21.25■□□□□ 0.99
ABCA3Q99758 ZBTB45P2-201ENST00000452245 1531 ntBASIC21.25■□□□□ 0.99
ABCA3Q99758 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC21.25■□□□□ 0.99
ABCA3Q99758 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC21.24■□□□□ 0.99
ABCA3Q99758 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC21.24■□□□□ 0.99
ABCA3Q99758 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
ABCA3Q99758 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC21.24■□□□□ 0.99
ABCA3Q99758 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
ABCA3Q99758 AC087289.5-201ENST00000586076 3175 ntBASIC21.24■□□□□ 0.99
ABCA3Q99758 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC21.24■□□□□ 0.99
ABCA3Q99758 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
ABCA3Q99758 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
ABCA3Q99758 MIR33B-201ENST00000385104 96 ntBASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms