Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 HNRNPA1P48-201ENST00000562726 1377 ntBASIC19.72■□□□□ 0.75
CCDC88AQ3V6T2 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC88AQ3V6T2 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC88AQ3V6T2 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC88AQ3V6T2 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
CCDC88AQ3V6T2 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.71■□□□□ 0.75
CCDC88AQ3V6T2 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC88AQ3V6T2 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC88AQ3V6T2 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC88AQ3V6T2 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC88AQ3V6T2 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC88AQ3V6T2 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
CCDC88AQ3V6T2 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC19.71■□□□□ 0.75
CCDC88AQ3V6T2 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC19.71■□□□□ 0.75
CCDC88AQ3V6T2 RN7SL190P-201ENST00000582519 257 ntBASIC19.71■□□□□ 0.75
CCDC88AQ3V6T2 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC19.71■□□□□ 0.75
CCDC88AQ3V6T2 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC88AQ3V6T2 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC88AQ3V6T2 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC88AQ3V6T2 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC88AQ3V6T2 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
CCDC88AQ3V6T2 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC88AQ3V6T2 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC88AQ3V6T2 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC88AQ3V6T2 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
CCDC88AQ3V6T2 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC88AQ3V6T2 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC19.71■□□□□ 0.75
CCDC88AQ3V6T2 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC88AQ3V6T2 AC124283.3-201ENST00000570869 594 ntBASIC19.71■□□□□ 0.75
CCDC88AQ3V6T2 KLK3-211ENST00000597483 810 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC88AQ3V6T2 RHOXF1P1-202ENST00000635473 501 ntBASIC19.71■□□□□ 0.75
CCDC88AQ3V6T2 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC88AQ3V6T2 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
CCDC88AQ3V6T2 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC19.71■□□□□ 0.75
CCDC88AQ3V6T2 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 LOX-206ENST00000639739 1626 ntTSL 5 BASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 BCRP2-202ENST00000447763 634 ntBASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 BCRP6-201ENST00000510112 632 ntBASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 BCRP7-201ENST00000511549 544 ntBASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 AC079316.1-201ENST00000548397 411 ntBASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 ACTG1P17-201ENST00000558391 1119 ntBASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 Z97205.2-201ENST00000564697 1639 ntBASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC88AQ3V6T2 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 FXNP2-201ENST00000411625 547 ntBASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 AL139010.1-201ENST00000454878 894 ntBASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 AL589702.1-201ENST00000641229 1509 ntBASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms