Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC17.35■□□□□ 0.37
USP41Q3LFD5 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
USP41Q3LFD5 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
USP41Q3LFD5 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP41Q3LFD5 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP41Q3LFD5 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP41Q3LFD5 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP41Q3LFD5 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP41Q3LFD5 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP41Q3LFD5 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC17.34■□□□□ 0.37
USP41Q3LFD5 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP41Q3LFD5 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
USP41Q3LFD5 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP41Q3LFD5 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP41Q3LFD5 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC17.34■□□□□ 0.37
USP41Q3LFD5 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.34■□□□□ 0.37
USP41Q3LFD5 SPDYE17-201ENST00000412399 783 ntBASIC17.34■□□□□ 0.37
USP41Q3LFD5 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.34■□□□□ 0.37
USP41Q3LFD5 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP41Q3LFD5 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC17.34■□□□□ 0.37
USP41Q3LFD5 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC17.34■□□□□ 0.37
USP41Q3LFD5 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC17.34■□□□□ 0.37
USP41Q3LFD5 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP41Q3LFD5 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
USP41Q3LFD5 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC17.34■□□□□ 0.37
USP41Q3LFD5 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.34■□□□□ 0.37
USP41Q3LFD5 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC17.34■□□□□ 0.37
USP41Q3LFD5 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
USP41Q3LFD5 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC17.34■□□□□ 0.37
USP41Q3LFD5 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
USP41Q3LFD5 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.34■□□□□ 0.37
USP41Q3LFD5 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP41Q3LFD5 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC17.34■□□□□ 0.37
USP41Q3LFD5 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
USP41Q3LFD5 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP41Q3LFD5 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC17.34■□□□□ 0.37
USP41Q3LFD5 PCGF3-213ENST00000620529 1899 ntBASIC17.34■□□□□ 0.37
USP41Q3LFD5 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC17.34■□□□□ 0.37
USP41Q3LFD5 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.34■□□□□ 0.37
USP41Q3LFD5 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.34■□□□□ 0.37
USP41Q3LFD5 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP41Q3LFD5 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP41Q3LFD5 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.34■□□□□ 0.37
USP41Q3LFD5 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.33■□□□□ 0.37
USP41Q3LFD5 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.33■□□□□ 0.37
USP41Q3LFD5 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
USP41Q3LFD5 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC17.33■□□□□ 0.37
USP41Q3LFD5 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
USP41Q3LFD5 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
USP41Q3LFD5 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
USP41Q3LFD5 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
USP41Q3LFD5 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.33■□□□□ 0.37
USP41Q3LFD5 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
USP41Q3LFD5 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
USP41Q3LFD5 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
USP41Q3LFD5 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
USP41Q3LFD5 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC17.33■□□□□ 0.37
USP41Q3LFD5 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC17.33■□□□□ 0.37
USP41Q3LFD5 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
USP41Q3LFD5 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
USP41Q3LFD5 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
USP41Q3LFD5 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
USP41Q3LFD5 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
USP41Q3LFD5 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
USP41Q3LFD5 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC17.33■□□□□ 0.37
USP41Q3LFD5 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC17.33■□□□□ 0.37
USP41Q3LFD5 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC17.33■□□□□ 0.36
USP41Q3LFD5 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
USP41Q3LFD5 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
USP41Q3LFD5 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
USP41Q3LFD5 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
USP41Q3LFD5 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
USP41Q3LFD5 COX5BP8-201ENST00000416911 349 ntBASIC17.33■□□□□ 0.36
USP41Q3LFD5 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
USP41Q3LFD5 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC17.33■□□□□ 0.36
USP41Q3LFD5 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC17.33■□□□□ 0.36
USP41Q3LFD5 AL139010.1-201ENST00000454878 894 ntBASIC17.33■□□□□ 0.36
USP41Q3LFD5 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC17.33■□□□□ 0.36
USP41Q3LFD5 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
USP41Q3LFD5 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC17.33■□□□□ 0.36
USP41Q3LFD5 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC17.33■□□□□ 0.36
USP41Q3LFD5 SRP9-204ENST00000619790 377 ntTSL 2 BASIC17.33■□□□□ 0.36
USP41Q3LFD5 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC17.33■□□□□ 0.36
USP41Q3LFD5 AL033527.5-202ENST00000641632 1098 ntBASIC17.33■□□□□ 0.36
USP41Q3LFD5 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC17.33■□□□□ 0.36
USP41Q3LFD5 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC17.33■□□□□ 0.36
USP41Q3LFD5 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.36
USP41Q3LFD5 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.36
USP41Q3LFD5 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
USP41Q3LFD5 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
USP41Q3LFD5 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
USP41Q3LFD5 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
USP41Q3LFD5 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC17.32■□□□□ 0.36
USP41Q3LFD5 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
USP41Q3LFD5 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP41Q3LFD5 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
USP41Q3LFD5 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
USP41Q3LFD5 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
USP41Q3LFD5 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC17.32■□□□□ 0.36
USP41Q3LFD5 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms