Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC21.35■■□□□ 1.01
RIPK4P57078 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC21.35■■□□□ 1.01
RIPK4P57078 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RIPK4P57078 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RIPK4P57078 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RIPK4P57078 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RIPK4P57078 MIR943-201ENST00000401286 94 ntBASIC21.35■■□□□ 1.01
RIPK4P57078 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RIPK4P57078 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC21.35■■□□□ 1.01
RIPK4P57078 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
RIPK4P57078 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC21.35■■□□□ 1.01
RIPK4P57078 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC21.35■■□□□ 1.01
RIPK4P57078 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RIPK4P57078 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RIPK4P57078 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RIPK4P57078 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC21.35■■□□□ 1.01
RIPK4P57078 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
RIPK4P57078 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RIPK4P57078 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC21.35■■□□□ 1.01
RIPK4P57078 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC21.35■■□□□ 1.01
RIPK4P57078 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
RIPK4P57078 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RIPK4P57078 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
RIPK4P57078 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RIPK4P57078 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC21.35■■□□□ 1.01
RIPK4P57078 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
RIPK4P57078 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
RIPK4P57078 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC21.35■■□□□ 1.01
RIPK4P57078 FO538757.1-201ENST00000623083 1397 ntBASIC21.35■■□□□ 1.01
RIPK4P57078 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RIPK4P57078 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
RIPK4P57078 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RIPK4P57078 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RIPK4P57078 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
RIPK4P57078 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC21.34■■□□□ 1.01
RIPK4P57078 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
RIPK4P57078 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
RIPK4P57078 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC21.34■■□□□ 1.01
RIPK4P57078 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
RIPK4P57078 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RIPK4P57078 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RIPK4P57078 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC21.34■■□□□ 1.01
RIPK4P57078 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RIPK4P57078 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
RIPK4P57078 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
RIPK4P57078 TREML5P-201ENST00000421694 576 ntBASIC21.34■■□□□ 1.01
RIPK4P57078 AC005498.2-205ENST00000593218 784 ntBASIC21.34■■□□□ 1.01
RIPK4P57078 RN7SL828P-201ENST00000607615 303 ntBASIC21.34■■□□□ 1.01
RIPK4P57078 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RIPK4P57078 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RIPK4P57078 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RIPK4P57078 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
RIPK4P57078 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC21.34■■□□□ 1.01
RIPK4P57078 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC21.34■■□□□ 1.01
RIPK4P57078 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
RIPK4P57078 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
RIPK4P57078 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC21.34■■□□□ 1.01
RIPK4P57078 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RIPK4P57078 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC21.34■■□□□ 1.01
RIPK4P57078 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC21.34■■□□□ 1.01
RIPK4P57078 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC21.34■■□□□ 1.01
RIPK4P57078 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RIPK4P57078 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RIPK4P57078 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC21.33■■□□□ 1.01
RIPK4P57078 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RIPK4P57078 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
RIPK4P57078 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RIPK4P57078 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
RIPK4P57078 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC21.33■■□□□ 1.01
RIPK4P57078 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1.01
RIPK4P57078 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
RIPK4P57078 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RIPK4P57078 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
RIPK4P57078 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
RIPK4P57078 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
RIPK4P57078 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RIPK4P57078 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
RIPK4P57078 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC21.33■■□□□ 1.01
RIPK4P57078 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC21.33■■□□□ 1.01
RIPK4P57078 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
RIPK4P57078 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC21.33■■□□□ 1.01
RIPK4P57078 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC21.33■■□□□ 1.01
RIPK4P57078 LITAF-210ENST00000571976 548 ntTSL 2 BASIC21.33■■□□□ 1.01
RIPK4P57078 LITAF-214ENST00000574703 486 ntTSL 2 BASIC21.33■■□□□ 1.01
RIPK4P57078 NAA38-207ENST00000576861 556 ntTSL 3 BASIC21.33■■□□□ 1.01
RIPK4P57078 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC21.33■■□□□ 1.01
RIPK4P57078 AL133215.2-201ENST00000609242 977 ntBASIC21.33■■□□□ 1.01
RIPK4P57078 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC21.33■■□□□ 1.01
RIPK4P57078 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
RIPK4P57078 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC21.33■■□□□ 1.01
RIPK4P57078 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC21.33■■□□□ 1
RIPK4P57078 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
RIPK4P57078 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1
RIPK4P57078 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
RIPK4P57078 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
RIPK4P57078 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
RIPK4P57078 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC21.33■■□□□ 1
RIPK4P57078 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1
RIPK4P57078 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC21.33■■□□□ 1
RIPK4P57078 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC21.32■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms