Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC12.36□□□□□ -0.43
FOXA3P55318 SNX33P1-201ENST00000592116 1762 ntBASIC12.36□□□□□ -0.43
FOXA3P55318 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC12.36□□□□□ -0.43
FOXA3P55318 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA3P55318 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
FOXA3P55318 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA3P55318 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA3P55318 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC12.36□□□□□ -0.43
FOXA3P55318 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA3P55318 AL671710.1-201ENST00000610245 2349 ntBASIC12.36□□□□□ -0.43
FOXA3P55318 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA3P55318 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC12.36□□□□□ -0.43
FOXA3P55318 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA3P55318 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
FOXA3P55318 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC12.36□□□□□ -0.43
FOXA3P55318 CRAT-202ENST00000393384 973 ntTSL 2 BASIC12.36□□□□□ -0.43
FOXA3P55318 STARP1-201ENST00000397973 869 ntBASIC12.36□□□□□ -0.43
FOXA3P55318 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA3P55318 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA3P55318 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC12.36□□□□□ -0.43
FOXA3P55318 USP36-216ENST00000589424 970 ntTSL 5 BASIC12.36□□□□□ -0.43
FOXA3P55318 AL138966.2-201ENST00000621997 464 ntBASIC12.36□□□□□ -0.43
FOXA3P55318 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC12.36□□□□□ -0.43
FOXA3P55318 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
FOXA3P55318 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA3P55318 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA3P55318 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA3P55318 AL512652.2-201ENST00000625156 1716 ntBASIC12.36□□□□□ -0.43
FOXA3P55318 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA3P55318 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA3P55318 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
FOXA3P55318 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA3P55318 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC12.36□□□□□ -0.43
FOXA3P55318 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC12.36□□□□□ -0.43
FOXA3P55318 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
FOXA3P55318 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA3P55318 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA3P55318 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA3P55318 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC12.36□□□□□ -0.43
FOXA3P55318 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA3P55318 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA3P55318 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA3P55318 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA3P55318 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
FOXA3P55318 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC12.35□□□□□ -0.43
FOXA3P55318 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC12.35□□□□□ -0.43
FOXA3P55318 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC12.35□□□□□ -0.43
FOXA3P55318 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 AL031731.1-201ENST00000642131 2094 ntBASIC12.35□□□□□ -0.43
FOXA3P55318 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC12.35□□□□□ -0.43
FOXA3P55318 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
FOXA3P55318 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 MIR648-201ENST00000385046 94 ntBASIC12.35□□□□□ -0.43
FOXA3P55318 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC12.35□□□□□ -0.43
FOXA3P55318 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 KLF4P1-201ENST00000412782 1185 ntBASIC12.35□□□□□ -0.43
FOXA3P55318 SPDYE15P-201ENST00000424157 909 ntBASIC12.35□□□□□ -0.43
FOXA3P55318 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC12.35□□□□□ -0.43
FOXA3P55318 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC12.35□□□□□ -0.43
FOXA3P55318 AC140113.3-201ENST00000605663 199 ntBASIC12.35□□□□□ -0.43
FOXA3P55318 SNX21-213ENST00000614929 587 ntTSL 5 BASIC12.35□□□□□ -0.43
FOXA3P55318 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC12.35□□□□□ -0.43
FOXA3P55318 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
FOXA3P55318 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC12.35□□□□□ -0.43
FOXA3P55318 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 RER1-203ENST00000378513 3000 ntTSL 3 BASIC12.35□□□□□ -0.43
FOXA3P55318 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC12.35□□□□□ -0.43
FOXA3P55318 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 PPP1R26P4-201ENST00000619065 3527 ntBASIC12.35□□□□□ -0.43
FOXA3P55318 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC12.35□□□□□ -0.43
FOXA3P55318 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC12.35□□□□□ -0.43
FOXA3P55318 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA3P55318 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC12.35□□□□□ -0.43
FOXA3P55318 HNRNPRP1-201ENST00000453465 1695 ntBASIC12.35□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms