Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC004835.2-201ENST00000603762 682 ntBASIC16.07■□□□□ 0.16
SHMT2P34897 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC16.07■□□□□ 0.16
SHMT2P34897 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC16.07■□□□□ 0.16
SHMT2P34897 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC16.07■□□□□ 0.16
SHMT2P34897 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.07■□□□□ 0.16
SHMT2P34897 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.07■□□□□ 0.16
SHMT2P34897 BSG-215ENST00000618006 1329 ntTSL 2 BASIC16.07■□□□□ 0.16
SHMT2P34897 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC16.07■□□□□ 0.16
SHMT2P34897 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHMT2P34897 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHMT2P34897 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.07■□□□□ 0.16
SHMT2P34897 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
SHMT2P34897 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.07■□□□□ 0.16
SHMT2P34897 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SHMT2P34897 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SHMT2P34897 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHMT2P34897 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHMT2P34897 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHMT2P34897 AC092364.2-201ENST00000596710 2692 ntBASIC16.07■□□□□ 0.16
SHMT2P34897 AC092850.2-201ENST00000623821 2697 ntBASIC16.07■□□□□ 0.16
SHMT2P34897 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHMT2P34897 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.07■□□□□ 0.16
SHMT2P34897 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.07■□□□□ 0.16
SHMT2P34897 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHMT2P34897 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SHMT2P34897 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHMT2P34897 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHMT2P34897 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SHMT2P34897 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
SHMT2P34897 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHMT2P34897 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.06■□□□□ 0.16
SHMT2P34897 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHMT2P34897 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SHMT2P34897 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHMT2P34897 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
SHMT2P34897 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.06■□□□□ 0.16
SHMT2P34897 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHMT2P34897 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHMT2P34897 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHMT2P34897 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.06■□□□□ 0.16
SHMT2P34897 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.06■□□□□ 0.16
SHMT2P34897 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHMT2P34897 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC16.06■□□□□ 0.16
SHMT2P34897 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHMT2P34897 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHMT2P34897 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHMT2P34897 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SHMT2P34897 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC16.06■□□□□ 0.16
SHMT2P34897 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC16.06■□□□□ 0.16
SHMT2P34897 CNN2P11-201ENST00000429351 262 ntBASIC16.06■□□□□ 0.16
SHMT2P34897 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC16.06■□□□□ 0.16
SHMT2P34897 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.06■□□□□ 0.16
SHMT2P34897 AC079140.1-201ENST00000508039 487 ntBASIC16.06■□□□□ 0.16
SHMT2P34897 KRT8P48-201ENST00000515599 1220 ntBASIC16.06■□□□□ 0.16
SHMT2P34897 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC16.06■□□□□ 0.16
SHMT2P34897 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC16.06■□□□□ 0.16
SHMT2P34897 AP001160.2-201ENST00000596071 487 ntBASIC16.06■□□□□ 0.16
SHMT2P34897 AC022145.2-201ENST00000598203 171 ntBASIC16.06■□□□□ 0.16
SHMT2P34897 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC16.06■□□□□ 0.16
SHMT2P34897 AL596442.2-201ENST00000610240 980 ntBASIC16.06■□□□□ 0.16
SHMT2P34897 AC068418.2-201ENST00000577309 3703 ntBASIC16.06■□□□□ 0.16
SHMT2P34897 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SHMT2P34897 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
SHMT2P34897 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.06■□□□□ 0.16
SHMT2P34897 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
SHMT2P34897 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHMT2P34897 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHMT2P34897 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SHMT2P34897 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SHMT2P34897 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.06■□□□□ 0.16
SHMT2P34897 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.06■□□□□ 0.16
SHMT2P34897 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
SHMT2P34897 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SHMT2P34897 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.05■□□□□ 0.16
SHMT2P34897 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.05■□□□□ 0.16
SHMT2P34897 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SHMT2P34897 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SHMT2P34897 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHMT2P34897 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.05■□□□□ 0.16
SHMT2P34897 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHMT2P34897 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
SHMT2P34897 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SHMT2P34897 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SHMT2P34897 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHMT2P34897 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.05■□□□□ 0.16
SHMT2P34897 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHMT2P34897 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC16.05■□□□□ 0.16
SHMT2P34897 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SHMT2P34897 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SHMT2P34897 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SHMT2P34897 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.05■□□□□ 0.16
SHMT2P34897 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SHMT2P34897 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC16.05■□□□□ 0.16
SHMT2P34897 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC16.05■□□□□ 0.16
SHMT2P34897 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC16.05■□□□□ 0.16
SHMT2P34897 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
SHMT2P34897 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC16.05■□□□□ 0.16
SHMT2P34897 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
SHMT2P34897 INO80E-210ENST00000567705 880 ntTSL 3 BASIC16.05■□□□□ 0.16
SHMT2P34897 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms