Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC12.55□□□□□ -0.4
HLA-DMBP28068 CDK2AP2P3-201ENST00000422476 372 ntBASIC12.55□□□□□ -0.4
HLA-DMBP28068 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
HLA-DMBP28068 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DMBP28068 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC12.55□□□□□ -0.4
HLA-DMBP28068 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC12.55□□□□□ -0.4
HLA-DMBP28068 RNA5SP419-201ENST00000515908 135 ntBASIC12.55□□□□□ -0.4
HLA-DMBP28068 OR7E14P-202ENST00000530490 1290 ntBASIC12.55□□□□□ -0.4
HLA-DMBP28068 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC12.55□□□□□ -0.4
HLA-DMBP28068 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
HLA-DMBP28068 PRKN-208ENST00000610470 531 ntTSL 2 BASIC12.55□□□□□ -0.4
HLA-DMBP28068 PRKN-209ENST00000612485 225 ntTSL 5 BASIC12.55□□□□□ -0.4
HLA-DMBP28068 FAM215A-202ENST00000632077 792 ntBASIC12.55□□□□□ -0.4
HLA-DMBP28068 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
HLA-DMBP28068 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DMBP28068 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC12.55□□□□□ -0.4
HLA-DMBP28068 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC12.55□□□□□ -0.4
HLA-DMBP28068 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC12.55□□□□□ -0.4
HLA-DMBP28068 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DMBP28068 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DMBP28068 AP003680.1-201ENST00000598970 3660 ntBASIC12.55□□□□□ -0.4
HLA-DMBP28068 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC12.55□□□□□ -0.4
HLA-DMBP28068 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
HLA-DMBP28068 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC12.55□□□□□ -0.4
HLA-DMBP28068 IL9RP2-201ENST00000423948 1312 ntBASIC12.55□□□□□ -0.4
HLA-DMBP28068 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DMBP28068 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC12.55□□□□□ -0.4
HLA-DMBP28068 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DMBP28068 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DMBP28068 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DMBP28068 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DMBP28068 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DMBP28068 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DMBP28068 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DMBP28068 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC12.55□□□□□ -0.4
HLA-DMBP28068 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DMBP28068 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DMBP28068 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
HLA-DMBP28068 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DMBP28068 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC12.54□□□□□ -0.4
HLA-DMBP28068 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DMBP28068 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DMBP28068 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC12.54□□□□□ -0.4
HLA-DMBP28068 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC12.54□□□□□ -0.4
HLA-DMBP28068 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DMBP28068 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
HLA-DMBP28068 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DMBP28068 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DMBP28068 AL353732.1-201ENST00000569618 1459 ntBASIC12.54□□□□□ -0.4
HLA-DMBP28068 HARS-203ENST00000431330 1774 ntTSL 2 BASIC12.54□□□□□ -0.4
HLA-DMBP28068 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC12.54□□□□□ -0.4
HLA-DMBP28068 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
HLA-DMBP28068 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
HLA-DMBP28068 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
HLA-DMBP28068 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC12.54□□□□□ -0.4
HLA-DMBP28068 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DMBP28068 TEX30-205ENST00000376029 959 ntTSL 2 BASIC12.54□□□□□ -0.4
HLA-DMBP28068 AC073621.1-201ENST00000392730 636 ntBASIC12.54□□□□□ -0.4
HLA-DMBP28068 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC12.54□□□□□ -0.4
HLA-DMBP28068 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DMBP28068 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC12.54□□□□□ -0.4
HLA-DMBP28068 HNRNPDP1-201ENST00000439535 754 ntBASIC12.54□□□□□ -0.4
HLA-DMBP28068 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DMBP28068 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC12.54□□□□□ -0.4
HLA-DMBP28068 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DMBP28068 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC12.54□□□□□ -0.4
HLA-DMBP28068 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
HLA-DMBP28068 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC12.54□□□□□ -0.4
HLA-DMBP28068 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC12.54□□□□□ -0.4
HLA-DMBP28068 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC12.54□□□□□ -0.4
HLA-DMBP28068 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DMBP28068 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DMBP28068 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DMBP28068 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
HLA-DMBP28068 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DMBP28068 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DMBP28068 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
HLA-DMBP28068 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DMBP28068 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HLA-DMBP28068 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
HLA-DMBP28068 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC12.54□□□□□ -0.4
HLA-DMBP28068 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC12.53□□□□□ -0.4
HLA-DMBP28068 AC068587.6-202ENST00000641839 5619 ntBASIC12.53□□□□□ -0.4
HLA-DMBP28068 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC12.53□□□□□ -0.4
HLA-DMBP28068 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DMBP28068 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DMBP28068 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DMBP28068 CYP51A1P2-201ENST00000419457 1499 ntBASIC12.53□□□□□ -0.4
HLA-DMBP28068 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC12.53□□□□□ -0.4
HLA-DMBP28068 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DMBP28068 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC12.53□□□□□ -0.4
HLA-DMBP28068 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DMBP28068 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DMBP28068 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DMBP28068 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DMBP28068 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
HLA-DMBP28068 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DMBP28068 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
HLA-DMBP28068 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
HLA-DMBP28068 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms