Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC15.85■□□□□ 0.13
HOXC4P09017 RNA5-8SN1-201ENST00000610460 153 ntBASIC15.85■□□□□ 0.13
HOXC4P09017 RNA5-8SN5-202ENST00000612463 153 ntBASIC15.85■□□□□ 0.13
HOXC4P09017 RNA5-8SN4-201ENST00000613359 153 ntBASIC15.85■□□□□ 0.13
HOXC4P09017 RNA5-8SN5-201ENST00000619471 153 ntBASIC15.85■□□□□ 0.13
HOXC4P09017 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HOXC4P09017 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
HOXC4P09017 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
HOXC4P09017 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HOXC4P09017 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC15.85■□□□□ 0.13
HOXC4P09017 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC15.85■□□□□ 0.13
HOXC4P09017 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC15.85■□□□□ 0.13
HOXC4P09017 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
HOXC4P09017 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HOXC4P09017 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HOXC4P09017 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC15.85■□□□□ 0.13
HOXC4P09017 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
HOXC4P09017 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HOXC4P09017 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HOXC4P09017 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC15.84■□□□□ 0.13
HOXC4P09017 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
HOXC4P09017 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HOXC4P09017 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.84■□□□□ 0.13
HOXC4P09017 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HOXC4P09017 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HOXC4P09017 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
HOXC4P09017 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HOXC4P09017 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HOXC4P09017 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC15.84■□□□□ 0.13
HOXC4P09017 AC015922.1-201ENST00000421102 1152 ntBASIC15.84■□□□□ 0.13
HOXC4P09017 RASL12-203ENST00000434605 982 ntTSL 2 BASIC15.84■□□□□ 0.13
HOXC4P09017 AL353779.1-201ENST00000434793 351 ntBASIC15.84■□□□□ 0.13
HOXC4P09017 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC15.84■□□□□ 0.13
HOXC4P09017 TMPRSS11CP-201ENST00000453277 683 ntBASIC15.84■□□□□ 0.13
HOXC4P09017 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC15.84■□□□□ 0.13
HOXC4P09017 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC15.84■□□□□ 0.13
HOXC4P09017 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC15.84■□□□□ 0.13
HOXC4P09017 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
HOXC4P09017 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HOXC4P09017 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HOXC4P09017 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HOXC4P09017 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC15.84■□□□□ 0.13
HOXC4P09017 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HOXC4P09017 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HOXC4P09017 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HOXC4P09017 KRT8P37-201ENST00000451609 1420 ntBASIC15.84■□□□□ 0.13
HOXC4P09017 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
HOXC4P09017 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC15.84■□□□□ 0.13
HOXC4P09017 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HOXC4P09017 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HOXC4P09017 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HOXC4P09017 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HOXC4P09017 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.13
HOXC4P09017 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
HOXC4P09017 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.13
HOXC4P09017 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC15.83■□□□□ 0.13
HOXC4P09017 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
HOXC4P09017 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
HOXC4P09017 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC15.83■□□□□ 0.12
HOXC4P09017 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HOXC4P09017 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HOXC4P09017 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HOXC4P09017 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HOXC4P09017 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HOXC4P09017 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HOXC4P09017 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
HOXC4P09017 COPE-202ENST00000349893 948 ntTSL 2 BASIC15.83■□□□□ 0.12
HOXC4P09017 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
HOXC4P09017 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
HOXC4P09017 HAUS4P1-201ENST00000406739 1145 ntBASIC15.83■□□□□ 0.12
HOXC4P09017 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC15.83■□□□□ 0.12
HOXC4P09017 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC15.83■□□□□ 0.12
HOXC4P09017 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC15.83■□□□□ 0.12
HOXC4P09017 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
HOXC4P09017 RAB35-202ENST00000534951 939 ntTSL 2 BASIC15.83■□□□□ 0.12
HOXC4P09017 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HOXC4P09017 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC15.83■□□□□ 0.12
HOXC4P09017 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC15.83■□□□□ 0.12
HOXC4P09017 AC025048.3-201ENST00000590609 569 ntBASIC15.83■□□□□ 0.12
HOXC4P09017 AC005702.4-201ENST00000618393 416 ntBASIC15.83■□□□□ 0.12
HOXC4P09017 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
HOXC4P09017 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
HOXC4P09017 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HOXC4P09017 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HOXC4P09017 AL391825.1-201ENST00000457671 1364 ntBASIC15.83■□□□□ 0.12
HOXC4P09017 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
HOXC4P09017 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
HOXC4P09017 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC15.83■□□□□ 0.12
HOXC4P09017 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HOXC4P09017 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC15.83■□□□□ 0.12
HOXC4P09017 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HOXC4P09017 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HOXC4P09017 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
HOXC4P09017 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HOXC4P09017 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC15.82■□□□□ 0.12
HOXC4P09017 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HOXC4P09017 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC15.82■□□□□ 0.12
HOXC4P09017 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HOXC4P09017 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HOXC4P09017 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms