Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC15.75■□□□□ 0.11
SEMA3DO95025 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
SEMA3DO95025 AC006449.6-201ENST00000612330 2296 ntBASIC15.74■□□□□ 0.11
SEMA3DO95025 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SEMA3DO95025 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
SEMA3DO95025 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
SEMA3DO95025 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
SEMA3DO95025 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SEMA3DO95025 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SEMA3DO95025 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SEMA3DO95025 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC15.74■□□□□ 0.11
SEMA3DO95025 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC15.74■□□□□ 0.11
SEMA3DO95025 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC15.74■□□□□ 0.11
SEMA3DO95025 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SEMA3DO95025 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
SEMA3DO95025 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
SEMA3DO95025 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC15.74■□□□□ 0.11
SEMA3DO95025 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.74■□□□□ 0.11
SEMA3DO95025 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
SEMA3DO95025 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SEMA3DO95025 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC15.74■□□□□ 0.11
SEMA3DO95025 TEX30-205ENST00000376029 959 ntTSL 2 BASIC15.74■□□□□ 0.11
SEMA3DO95025 AC092474.2-201ENST00000424288 719 ntBASIC15.74■□□□□ 0.11
SEMA3DO95025 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC15.74■□□□□ 0.11
SEMA3DO95025 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
SEMA3DO95025 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
SEMA3DO95025 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
SEMA3DO95025 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC15.74■□□□□ 0.11
SEMA3DO95025 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC15.74■□□□□ 0.11
SEMA3DO95025 CFL1-202ENST00000524553 860 ntTSL 2 BASIC15.74■□□□□ 0.11
SEMA3DO95025 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
SEMA3DO95025 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SEMA3DO95025 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC15.74■□□□□ 0.11
SEMA3DO95025 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SEMA3DO95025 PIN1-206ENST00000587625 878 ntTSL 2 BASIC15.74■□□□□ 0.11
SEMA3DO95025 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC15.74■□□□□ 0.11
SEMA3DO95025 AC068137.2-201ENST00000605408 478 ntBASIC15.74■□□□□ 0.11
SEMA3DO95025 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC15.74■□□□□ 0.11
SEMA3DO95025 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC15.74■□□□□ 0.11
SEMA3DO95025 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC15.74■□□□□ 0.11
SEMA3DO95025 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SEMA3DO95025 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SEMA3DO95025 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SEMA3DO95025 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
SEMA3DO95025 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
SEMA3DO95025 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC15.74■□□□□ 0.11
SEMA3DO95025 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
SEMA3DO95025 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
SEMA3DO95025 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC15.74■□□□□ 0.11
SEMA3DO95025 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
SEMA3DO95025 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC15.74■□□□□ 0.11
SEMA3DO95025 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
SEMA3DO95025 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
SEMA3DO95025 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC15.74■□□□□ 0.11
SEMA3DO95025 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
SEMA3DO95025 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC15.73■□□□□ 0.11
SEMA3DO95025 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SEMA3DO95025 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SEMA3DO95025 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC15.73■□□□□ 0.11
SEMA3DO95025 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SEMA3DO95025 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SEMA3DO95025 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SEMA3DO95025 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SEMA3DO95025 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SEMA3DO95025 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SEMA3DO95025 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
SEMA3DO95025 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SEMA3DO95025 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
SEMA3DO95025 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
SEMA3DO95025 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
SEMA3DO95025 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
SEMA3DO95025 MED15P5-201ENST00000423150 992 ntBASIC15.73■□□□□ 0.11
SEMA3DO95025 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC15.73■□□□□ 0.11
SEMA3DO95025 KRT18P34-201ENST00000488218 1270 ntBASIC15.73■□□□□ 0.11
SEMA3DO95025 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC15.73■□□□□ 0.11
SEMA3DO95025 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC15.73■□□□□ 0.11
SEMA3DO95025 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC15.73■□□□□ 0.11
SEMA3DO95025 CBFB-203ENST00000561924 584 ntTSL 5 BASIC15.73■□□□□ 0.11
SEMA3DO95025 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
SEMA3DO95025 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC15.73■□□□□ 0.11
SEMA3DO95025 CD7-202ENST00000578509 925 ntTSL 3 BASIC15.73■□□□□ 0.11
SEMA3DO95025 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC15.73■□□□□ 0.11
SEMA3DO95025 AL078644.1-201ENST00000609881 752 ntBASIC15.73■□□□□ 0.11
SEMA3DO95025 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC15.73■□□□□ 0.11
SEMA3DO95025 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC15.73■□□□□ 0.11
SEMA3DO95025 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
SEMA3DO95025 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SEMA3DO95025 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC15.73■□□□□ 0.11
SEMA3DO95025 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC15.73■□□□□ 0.11
SEMA3DO95025 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SEMA3DO95025 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC15.73■□□□□ 0.11
SEMA3DO95025 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SEMA3DO95025 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC15.73■□□□□ 0.11
SEMA3DO95025 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SEMA3DO95025 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
SEMA3DO95025 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC15.72■□□□□ 0.11
SEMA3DO95025 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC15.72■□□□□ 0.11
SEMA3DO95025 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC15.72■□□□□ 0.11
SEMA3DO95025 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC15.72■□□□□ 0.11
SEMA3DO95025 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms