Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC22.58■■□□□ 1.2
NPHP4O75161 AC135050.7-201ENST00000624508 2218 ntBASIC22.57■■□□□ 1.2
NPHP4O75161 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC22.57■■□□□ 1.2
NPHP4O75161 FTLP10-202ENST00000505798 471 ntBASIC22.57■■□□□ 1.2
NPHP4O75161 AP002490.2-201ENST00000524791 560 ntBASIC22.57■■□□□ 1.2
NPHP4O75161 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP4O75161 KLK3-207ENST00000595952 969 ntTSL 3 BASIC22.57■■□□□ 1.2
NPHP4O75161 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC22.57■■□□□ 1.2
NPHP4O75161 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC22.57■■□□□ 1.2
NPHP4O75161 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC22.57■■□□□ 1.2
NPHP4O75161 PXK-206ENST00000463280 2825 ntTSL 2 BASIC22.57■■□□□ 1.2
NPHP4O75161 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP4O75161 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP4O75161 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP4O75161 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP4O75161 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP4O75161 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP4O75161 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
NPHP4O75161 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP4O75161 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP4O75161 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC22.57■■□□□ 1.2
NPHP4O75161 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP4O75161 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC22.57■■□□□ 1.2
NPHP4O75161 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC22.57■■□□□ 1.2
NPHP4O75161 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
NPHP4O75161 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC22.57■■□□□ 1.2
NPHP4O75161 MIR1202-201ENST00000408529 83 ntBASIC22.57■■□□□ 1.2
NPHP4O75161 HLA-DQB2-229ENST00000411527 1059 ntBASIC22.57■■□□□ 1.2
NPHP4O75161 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC22.57■■□□□ 1.2
NPHP4O75161 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP4O75161 AC026410.3-201ENST00000514280 936 ntBASIC22.57■■□□□ 1.2
NPHP4O75161 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC22.57■■□□□ 1.2
NPHP4O75161 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC22.57■■□□□ 1.2
NPHP4O75161 NAT9-222ENST00000583476 583 ntTSL 3 BASIC22.57■■□□□ 1.2
NPHP4O75161 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC22.57■■□□□ 1.2
NPHP4O75161 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC22.57■■□□□ 1.2
NPHP4O75161 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP4O75161 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
NPHP4O75161 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP4O75161 AL138709.1-201ENST00000614840 1693 ntBASIC22.56■■□□□ 1.2
NPHP4O75161 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP4O75161 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC22.56■■□□□ 1.2
NPHP4O75161 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC22.56■■□□□ 1.2
NPHP4O75161 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC22.56■■□□□ 1.2
NPHP4O75161 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC22.56■■□□□ 1.2
NPHP4O75161 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC22.56■■□□□ 1.2
NPHP4O75161 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP4O75161 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP4O75161 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP4O75161 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC22.56■■□□□ 1.2
NPHP4O75161 AIRN-201ENST00000601203 4374 ntBASIC22.56■■□□□ 1.2
NPHP4O75161 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP4O75161 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP4O75161 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP4O75161 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
NPHP4O75161 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC22.56■■□□□ 1.2
NPHP4O75161 PTPA-218ENST00000435132 618 ntTSL 2 BASIC22.56■■□□□ 1.2
NPHP4O75161 RN7SL720P-201ENST00000488178 304 ntBASIC22.56■■□□□ 1.2
NPHP4O75161 HNRNPUP1-201ENST00000554987 333 ntBASIC22.56■■□□□ 1.2
NPHP4O75161 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC22.56■■□□□ 1.2
NPHP4O75161 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP4O75161 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC22.56■■□□□ 1.2
NPHP4O75161 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP4O75161 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP4O75161 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
NPHP4O75161 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
NPHP4O75161 PCGF3-213ENST00000620529 1899 ntBASIC22.55■■□□□ 1.2
NPHP4O75161 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC22.55■■□□□ 1.2
NPHP4O75161 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC22.55■■□□□ 1.2
NPHP4O75161 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
NPHP4O75161 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
NPHP4O75161 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
NPHP4O75161 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
NPHP4O75161 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
NPHP4O75161 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
NPHP4O75161 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC22.55■■□□□ 1.2
NPHP4O75161 HSPB1P2-201ENST00000448722 546 ntBASIC22.55■■□□□ 1.2
NPHP4O75161 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
NPHP4O75161 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC22.55■■□□□ 1.2
NPHP4O75161 AC245884.6-201ENST00000515672 1067 ntBASIC22.55■■□□□ 1.2
NPHP4O75161 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC22.55■■□□□ 1.2
NPHP4O75161 KSR1-207ENST00000578981 748 ntTSL 4 BASIC22.55■■□□□ 1.2
NPHP4O75161 NKG7-204ENST00000595217 816 ntTSL 2 BASIC22.55■■□□□ 1.2
NPHP4O75161 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC22.55■■□□□ 1.2
NPHP4O75161 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
NPHP4O75161 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC22.55■■□□□ 1.2
NPHP4O75161 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
NPHP4O75161 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC22.54■■□□□ 1.2
NPHP4O75161 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
NPHP4O75161 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
NPHP4O75161 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
NPHP4O75161 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
NPHP4O75161 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
NPHP4O75161 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
NPHP4O75161 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC22.54■■□□□ 1.2
NPHP4O75161 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC22.54■■□□□ 1.2
NPHP4O75161 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC22.54■■□□□ 1.2
NPHP4O75161 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC22.54■■□□□ 1.2
NPHP4O75161 AC243562.2-201ENST00000561247 970 ntBASIC22.54■■□□□ 1.2
NPHP4O75161 AP001505.2-201ENST00000616815 443 ntBASIC22.54■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms