Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC20.31■□□□□ 0.84
CACNA1FO60840 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC20.31■□□□□ 0.84
CACNA1FO60840 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
CACNA1FO60840 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CACNA1FO60840 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC20.31■□□□□ 0.84
CACNA1FO60840 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC20.31■□□□□ 0.84
CACNA1FO60840 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CACNA1FO60840 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CACNA1FO60840 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CACNA1FO60840 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CACNA1FO60840 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CACNA1FO60840 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CACNA1FO60840 FLII-221ENST00000578558 2377 ntTSL 5 BASIC20.31■□□□□ 0.84
CACNA1FO60840 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CACNA1FO60840 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC20.3■□□□□ 0.84
CACNA1FO60840 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CACNA1FO60840 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CACNA1FO60840 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CACNA1FO60840 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CACNA1FO60840 SERBP1P5-201ENST00000510079 1181 ntBASIC20.3■□□□□ 0.84
CACNA1FO60840 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC20.3■□□□□ 0.84
CACNA1FO60840 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CACNA1FO60840 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC20.3■□□□□ 0.84
CACNA1FO60840 WASH4P-201ENST00000564273 1246 ntBASIC20.3■□□□□ 0.84
CACNA1FO60840 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC20.3■□□□□ 0.84
CACNA1FO60840 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC20.3■□□□□ 0.84
CACNA1FO60840 AC097359.3-201ENST00000603982 1210 ntBASIC20.3■□□□□ 0.84
CACNA1FO60840 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CACNA1FO60840 AC074044.1-201ENST00000609673 707 ntBASIC20.3■□□□□ 0.84
CACNA1FO60840 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CACNA1FO60840 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC20.3■□□□□ 0.84
CACNA1FO60840 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CACNA1FO60840 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
CACNA1FO60840 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CACNA1FO60840 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CACNA1FO60840 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CACNA1FO60840 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC20.3■□□□□ 0.84
CACNA1FO60840 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CACNA1FO60840 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
CACNA1FO60840 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CACNA1FO60840 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CACNA1FO60840 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
CACNA1FO60840 RAC2-202ENST00000401529 569 ntTSL 4 BASIC20.3■□□□□ 0.84
CACNA1FO60840 RAD18-204ENST00000418463 563 ntTSL 4 BASIC20.3■□□□□ 0.84
CACNA1FO60840 RAD18-205ENST00000421052 582 ntTSL 3 BASIC20.3■□□□□ 0.84
CACNA1FO60840 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC20.3■□□□□ 0.84
CACNA1FO60840 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC20.3■□□□□ 0.84
CACNA1FO60840 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC20.3■□□□□ 0.84
CACNA1FO60840 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC20.3■□□□□ 0.84
CACNA1FO60840 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CACNA1FO60840 AC004461.2-201ENST00000629517 803 ntBASIC20.3■□□□□ 0.84
CACNA1FO60840 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC20.3■□□□□ 0.84
CACNA1FO60840 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CACNA1FO60840 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
CACNA1FO60840 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CACNA1FO60840 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
CACNA1FO60840 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC20.29■□□□□ 0.84
CACNA1FO60840 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC20.29■□□□□ 0.84
CACNA1FO60840 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CACNA1FO60840 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CACNA1FO60840 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.29■□□□□ 0.84
CACNA1FO60840 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
CACNA1FO60840 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
CACNA1FO60840 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
CACNA1FO60840 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CACNA1FO60840 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CACNA1FO60840 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CACNA1FO60840 USP40-206ENST00000443711 628 ntTSL 2 BASIC20.29■□□□□ 0.84
CACNA1FO60840 FTH1-202ENST00000526640 786 ntTSL 2 BASIC20.29■□□□□ 0.84
CACNA1FO60840 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC20.29■□□□□ 0.84
CACNA1FO60840 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC20.29■□□□□ 0.84
CACNA1FO60840 SRD5A3P1-201ENST00000603021 949 ntBASIC20.29■□□□□ 0.84
CACNA1FO60840 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.29■□□□□ 0.84
CACNA1FO60840 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CACNA1FO60840 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC20.29■□□□□ 0.84
CACNA1FO60840 CDC14C-201ENST00000428251 1719 ntBASIC20.29■□□□□ 0.84
CACNA1FO60840 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CACNA1FO60840 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CACNA1FO60840 AL596087.1-201ENST00000400979 1969 ntBASIC20.29■□□□□ 0.84
CACNA1FO60840 WAC-202ENST00000347934 2839 ntTSL 5 BASIC20.29■□□□□ 0.84
CACNA1FO60840 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC20.29■□□□□ 0.84
CACNA1FO60840 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CACNA1FO60840 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.29■□□□□ 0.84
CACNA1FO60840 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
CACNA1FO60840 AC099398.1-201ENST00000567919 2776 ntBASIC20.29■□□□□ 0.84
CACNA1FO60840 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CACNA1FO60840 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CACNA1FO60840 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CACNA1FO60840 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
CACNA1FO60840 AL133267.1-201ENST00000398220 340 ntBASIC20.28■□□□□ 0.84
CACNA1FO60840 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC20.28■□□□□ 0.84
CACNA1FO60840 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
CACNA1FO60840 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC20.28■□□□□ 0.84
CACNA1FO60840 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CACNA1FO60840 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC20.28■□□□□ 0.84
CACNA1FO60840 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CACNA1FO60840 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC20.28■□□□□ 0.84
CACNA1FO60840 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC20.28■□□□□ 0.84
CACNA1FO60840 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
CACNA1FO60840 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms