Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
TRIM38O00635 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM38O00635 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM38O00635 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM38O00635 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC16.52■□□□□ 0.24
TRIM38O00635 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM38O00635 TSFM-210ENST00000550559 897 ntTSL 5 BASIC16.52■□□□□ 0.24
TRIM38O00635 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.52■□□□□ 0.24
TRIM38O00635 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
TRIM38O00635 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRIM38O00635 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.52■□□□□ 0.24
TRIM38O00635 AC103702.1-201ENST00000548801 2630 ntBASIC16.52■□□□□ 0.23
TRIM38O00635 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
TRIM38O00635 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
TRIM38O00635 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.23
TRIM38O00635 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TRIM38O00635 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TRIM38O00635 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
TRIM38O00635 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
TRIM38O00635 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
TRIM38O00635 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TRIM38O00635 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC16.52■□□□□ 0.23
TRIM38O00635 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.52■□□□□ 0.23
TRIM38O00635 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM38O00635 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM38O00635 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM38O00635 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM38O00635 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
TRIM38O00635 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.51■□□□□ 0.23
TRIM38O00635 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
TRIM38O00635 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM38O00635 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
TRIM38O00635 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM38O00635 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.51■□□□□ 0.23
TRIM38O00635 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM38O00635 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.51■□□□□ 0.23
TRIM38O00635 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.51■□□□□ 0.23
TRIM38O00635 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM38O00635 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM38O00635 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
TRIM38O00635 GPS2P2-201ENST00000430745 888 ntBASIC16.51■□□□□ 0.23
TRIM38O00635 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.51■□□□□ 0.23
TRIM38O00635 SPCS2P4-201ENST00000436160 681 ntBASIC16.51■□□□□ 0.23
TRIM38O00635 CNN2P2-201ENST00000443536 909 ntBASIC16.51■□□□□ 0.23
TRIM38O00635 CNN2P3-201ENST00000450201 906 ntBASIC16.51■□□□□ 0.23
TRIM38O00635 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC16.51■□□□□ 0.23
TRIM38O00635 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM38O00635 AC093214.1-201ENST00000511688 1107 ntBASIC16.51■□□□□ 0.23
TRIM38O00635 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC16.51■□□□□ 0.23
TRIM38O00635 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM38O00635 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC16.51■□□□□ 0.23
TRIM38O00635 INO80E-210ENST00000567705 880 ntTSL 3 BASIC16.51■□□□□ 0.23
TRIM38O00635 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC16.51■□□□□ 0.23
TRIM38O00635 AC138761.1-201ENST00000584393 385 ntBASIC16.51■□□□□ 0.23
TRIM38O00635 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC16.51■□□□□ 0.23
TRIM38O00635 AL136317.3-201ENST00000618497 906 ntBASIC16.51■□□□□ 0.23
TRIM38O00635 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM38O00635 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
TRIM38O00635 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
TRIM38O00635 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRIM38O00635 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.51■□□□□ 0.23
TRIM38O00635 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.5■□□□□ 0.23
TRIM38O00635 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM38O00635 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.5■□□□□ 0.23
TRIM38O00635 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM38O00635 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM38O00635 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
TRIM38O00635 AC132872.4-202ENST00000622924 2756 ntBASIC16.5■□□□□ 0.23
TRIM38O00635 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM38O00635 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM38O00635 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
TRIM38O00635 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM38O00635 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
TRIM38O00635 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
TRIM38O00635 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.5■□□□□ 0.23
TRIM38O00635 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
TRIM38O00635 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM38O00635 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM38O00635 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM38O00635 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM38O00635 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM38O00635 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.5■□□□□ 0.23
TRIM38O00635 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC16.5■□□□□ 0.23
TRIM38O00635 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC16.5■□□□□ 0.23
TRIM38O00635 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
TRIM38O00635 RNA5SP421-201ENST00000516864 134 ntBASIC16.5■□□□□ 0.23
TRIM38O00635 AC069262.1-201ENST00000539058 672 ntBASIC16.5■□□□□ 0.23
TRIM38O00635 AC051619.7-201ENST00000568314 623 ntBASIC16.5■□□□□ 0.23
TRIM38O00635 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC16.5■□□□□ 0.23
TRIM38O00635 AC005412.3-201ENST00000580309 715 ntBASIC16.5■□□□□ 0.23
TRIM38O00635 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC16.5■□□□□ 0.23
TRIM38O00635 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.5■□□□□ 0.23
TRIM38O00635 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM38O00635 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM38O00635 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM38O00635 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM38O00635 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM38O00635 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM38O00635 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRIM38O00635 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms