Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AL589702.1-201ENST00000641229 1509 ntBASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 KRT223P-202ENST00000449164 1292 ntBASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 FADS2-205ENST00000517839 469 ntTSL 3 BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
PCDHGA1Q9Y5H4 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 RPF1-202ENST00000370656 724 ntTSL 2 BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 AL139010.1-201ENST00000454878 894 ntBASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 AL033527.4-201ENST00000641026 673 ntBASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 AL109936.8-201ENST00000641772 604 ntBASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC15.67■□□□□ 0.1
PCDHGA1Q9Y5H4 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
PCDHGA1Q9Y5H4 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
PCDHGA1Q9Y5H4 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC15.66■□□□□ 0.1
PCDHGA1Q9Y5H4 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC15.66■□□□□ 0.1
PCDHGA1Q9Y5H4 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
PCDHGA1Q9Y5H4 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
PCDHGA1Q9Y5H4 CROCCP1-201ENST00000426910 5675 ntBASIC15.66■□□□□ 0.1
PCDHGA1Q9Y5H4 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PCDHGA1Q9Y5H4 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC15.66■□□□□ 0.1
PCDHGA1Q9Y5H4 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
PCDHGA1Q9Y5H4 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
PCDHGA1Q9Y5H4 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
PCDHGA1Q9Y5H4 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
PCDHGA1Q9Y5H4 OR6D1P-203ENST00000641209 4860 ntBASIC15.66■□□□□ 0.1
PCDHGA1Q9Y5H4 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
PCDHGA1Q9Y5H4 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms