Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
FOXA2Q9Y261 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 AL591424.1-201ENST00000442569 1213 ntBASIC13.29□□□□□ -0.28
FOXA2Q9Y261 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 HS6ST1P1-201ENST00000481504 1234 ntBASIC13.29□□□□□ -0.28
FOXA2Q9Y261 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 AC106730.1-201ENST00000566722 1090 ntBASIC13.29□□□□□ -0.28
FOXA2Q9Y261 RPS15-207ENST00000591032 550 ntTSL 3 BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 RPS15-212ENST00000593052 629 ntTSL 2 BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 AC027601.4-201ENST00000611259 610 ntBASIC13.29□□□□□ -0.28
FOXA2Q9Y261 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 AC132872.4-202ENST00000622924 2756 ntBASIC13.29□□□□□ -0.28
FOXA2Q9Y261 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
FOXA2Q9Y261 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 PAUPAR-201ENST00000630360 2965 ntBASIC13.28□□□□□ -0.28
FOXA2Q9Y261 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 MED15P5-201ENST00000423150 992 ntBASIC13.28□□□□□ -0.28
FOXA2Q9Y261 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 RNA5SP416-201ENST00000516838 111 ntBASIC13.28□□□□□ -0.28
FOXA2Q9Y261 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 CYB561-216ENST00000582297 897 ntTSL 3 BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 PIN1-206ENST00000587625 878 ntTSL 2 BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 NME4-212ENST00000621774 904 ntTSL 3 BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC13.28□□□□□ -0.28
FOXA2Q9Y261 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms