Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ERCC4Q92889 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ERCC4Q92889 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
ERCC4Q92889 AC092384.3-202ENST00000564646 2873 ntBASIC18.65■□□□□ 0.58
ERCC4Q92889 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC18.65■□□□□ 0.58
ERCC4Q92889 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
ERCC4Q92889 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ERCC4Q92889 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
ERCC4Q92889 F11R-206ENST00000621309 4770 ntTSL 5 BASIC18.65■□□□□ 0.58
ERCC4Q92889 FES-204ENST00000414248 2327 ntTSL 2 BASIC18.65■□□□□ 0.58
ERCC4Q92889 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC18.64■□□□□ 0.58
ERCC4Q92889 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC18.64■□□□□ 0.58
ERCC4Q92889 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
ERCC4Q92889 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
ERCC4Q92889 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC18.64■□□□□ 0.58
ERCC4Q92889 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ERCC4Q92889 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
ERCC4Q92889 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
ERCC4Q92889 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC18.64■□□□□ 0.57
ERCC4Q92889 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ERCC4Q92889 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC18.64■□□□□ 0.57
ERCC4Q92889 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ERCC4Q92889 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ERCC4Q92889 HARS-203ENST00000431330 1774 ntTSL 2 BASIC18.64■□□□□ 0.57
ERCC4Q92889 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
ERCC4Q92889 HNRNPDP1-201ENST00000439535 754 ntBASIC18.64■□□□□ 0.57
ERCC4Q92889 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC18.64■□□□□ 0.57
ERCC4Q92889 SCARNA2-201ENST00000458748 420 ntBASIC18.64■□□□□ 0.57
ERCC4Q92889 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC18.64■□□□□ 0.57
ERCC4Q92889 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC18.64■□□□□ 0.57
ERCC4Q92889 AC091167.2-201ENST00000579581 588 ntBASIC18.64■□□□□ 0.57
ERCC4Q92889 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
ERCC4Q92889 IFNL4P1-201ENST00000607083 540 ntBASIC18.64■□□□□ 0.57
ERCC4Q92889 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC18.64■□□□□ 0.57
ERCC4Q92889 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC18.64■□□□□ 0.57
ERCC4Q92889 TP73-AS1-207ENST00000624167 988 ntBASIC18.64■□□□□ 0.57
ERCC4Q92889 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ERCC4Q92889 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
ERCC4Q92889 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
ERCC4Q92889 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ERCC4Q92889 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
ERCC4Q92889 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ERCC4Q92889 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC18.64■□□□□ 0.57
ERCC4Q92889 CYP51A1P2-201ENST00000419457 1499 ntBASIC18.64■□□□□ 0.57
ERCC4Q92889 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC18.64■□□□□ 0.57
ERCC4Q92889 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC18.64■□□□□ 0.57
ERCC4Q92889 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC18.64■□□□□ 0.57
ERCC4Q92889 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC18.64■□□□□ 0.57
ERCC4Q92889 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ERCC4Q92889 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ERCC4Q92889 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC18.64■□□□□ 0.57
ERCC4Q92889 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
ERCC4Q92889 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
ERCC4Q92889 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ERCC4Q92889 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC18.63■□□□□ 0.57
ERCC4Q92889 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC18.63■□□□□ 0.57
ERCC4Q92889 WARS-232ENST00000556645 2508 ntTSL 5 BASIC18.63■□□□□ 0.57
ERCC4Q92889 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
ERCC4Q92889 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
ERCC4Q92889 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
ERCC4Q92889 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ERCC4Q92889 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
ERCC4Q92889 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
ERCC4Q92889 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
ERCC4Q92889 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
ERCC4Q92889 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
ERCC4Q92889 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ERCC4Q92889 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ERCC4Q92889 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC18.63■□□□□ 0.57
ERCC4Q92889 LAGE3P1-201ENST00000425356 484 ntBASIC18.63■□□□□ 0.57
ERCC4Q92889 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC18.63■□□□□ 0.57
ERCC4Q92889 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC18.63■□□□□ 0.57
ERCC4Q92889 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC18.63■□□□□ 0.57
ERCC4Q92889 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC18.63■□□□□ 0.57
ERCC4Q92889 AC012640.2-201ENST00000561606 901 ntBASIC18.63■□□□□ 0.57
ERCC4Q92889 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC18.63■□□□□ 0.57
ERCC4Q92889 CLEC4GP1-201ENST00000596555 870 ntBASIC18.63■□□□□ 0.57
ERCC4Q92889 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC18.63■□□□□ 0.57
ERCC4Q92889 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
ERCC4Q92889 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ERCC4Q92889 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ERCC4Q92889 AL353732.1-201ENST00000569618 1459 ntBASIC18.63■□□□□ 0.57
ERCC4Q92889 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC18.63■□□□□ 0.57
ERCC4Q92889 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC18.63■□□□□ 0.57
ERCC4Q92889 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC18.63■□□□□ 0.57
ERCC4Q92889 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
ERCC4Q92889 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ERCC4Q92889 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
ERCC4Q92889 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC18.62■□□□□ 0.57
ERCC4Q92889 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
ERCC4Q92889 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ERCC4Q92889 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC18.62■□□□□ 0.57
ERCC4Q92889 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC18.62■□□□□ 0.57
ERCC4Q92889 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
ERCC4Q92889 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
ERCC4Q92889 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
ERCC4Q92889 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
ERCC4Q92889 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC18.62■□□□□ 0.57
ERCC4Q92889 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC18.62■□□□□ 0.57
ERCC4Q92889 HIST2H3DP1-201ENST00000401004 416 ntBASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms