Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LMX1AQ8TE12 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LMX1AQ8TE12 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC15.9■□□□□ 0.14
LMX1AQ8TE12 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC15.9■□□□□ 0.14
LMX1AQ8TE12 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC15.9■□□□□ 0.14
LMX1AQ8TE12 AC105020.1-201ENST00000435356 2205 ntBASIC15.9■□□□□ 0.14
LMX1AQ8TE12 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LMX1AQ8TE12 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC15.9■□□□□ 0.14
LMX1AQ8TE12 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LMX1AQ8TE12 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC15.9■□□□□ 0.14
LMX1AQ8TE12 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LMX1AQ8TE12 GK-202ENST00000378941 458 ntTSL 3 BASIC15.9■□□□□ 0.14
LMX1AQ8TE12 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC15.9■□□□□ 0.14
LMX1AQ8TE12 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC15.9■□□□□ 0.14
LMX1AQ8TE12 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC15.9■□□□□ 0.14
LMX1AQ8TE12 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
LMX1AQ8TE12 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
LMX1AQ8TE12 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
LMX1AQ8TE12 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LMX1AQ8TE12 AC044860.1-202ENST00000559481 777 ntBASIC15.9■□□□□ 0.14
LMX1AQ8TE12 AC010336.2-201ENST00000564226 506 ntBASIC15.9■□□□□ 0.14
LMX1AQ8TE12 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LMX1AQ8TE12 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
LMX1AQ8TE12 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
LMX1AQ8TE12 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LMX1AQ8TE12 CEP83-AS1-201ENST00000623122 2482 ntBASIC15.9■□□□□ 0.14
LMX1AQ8TE12 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC15.9■□□□□ 0.14
LMX1AQ8TE12 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
LMX1AQ8TE12 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
LMX1AQ8TE12 BTBD7P1-201ENST00000447253 1453 ntBASIC15.9■□□□□ 0.14
LMX1AQ8TE12 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LMX1AQ8TE12 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LMX1AQ8TE12 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.9■□□□□ 0.14
LMX1AQ8TE12 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC15.9■□□□□ 0.14
LMX1AQ8TE12 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1AQ8TE12 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC15.89■□□□□ 0.13
LMX1AQ8TE12 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC15.89■□□□□ 0.13
LMX1AQ8TE12 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC15.89■□□□□ 0.13
LMX1AQ8TE12 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
LMX1AQ8TE12 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1AQ8TE12 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC15.89■□□□□ 0.13
LMX1AQ8TE12 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1AQ8TE12 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1AQ8TE12 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1AQ8TE12 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1AQ8TE12 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC15.89■□□□□ 0.13
LMX1AQ8TE12 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1AQ8TE12 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1AQ8TE12 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC15.89■□□□□ 0.13
LMX1AQ8TE12 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1AQ8TE12 NME2P1-201ENST00000426182 414 ntBASIC15.89■□□□□ 0.13
LMX1AQ8TE12 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1AQ8TE12 AL353779.1-201ENST00000434793 351 ntBASIC15.89■□□□□ 0.13
LMX1AQ8TE12 AL139010.1-201ENST00000454878 894 ntBASIC15.89■□□□□ 0.13
LMX1AQ8TE12 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC15.89■□□□□ 0.13
LMX1AQ8TE12 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC15.89■□□□□ 0.13
LMX1AQ8TE12 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1AQ8TE12 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1AQ8TE12 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1AQ8TE12 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1AQ8TE12 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1AQ8TE12 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1AQ8TE12 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1AQ8TE12 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1AQ8TE12 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC15.89■□□□□ 0.13
LMX1AQ8TE12 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC15.89■□□□□ 0.13
LMX1AQ8TE12 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1AQ8TE12 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC15.89■□□□□ 0.13
LMX1AQ8TE12 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC15.89■□□□□ 0.13
LMX1AQ8TE12 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
LMX1AQ8TE12 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 KRT8P12-202ENST00000472924 1397 ntBASIC15.88■□□□□ 0.13
LMX1AQ8TE12 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 CR383656.12-201ENST00000549567 513 ntBASIC15.88■□□□□ 0.13
LMX1AQ8TE12 TP53TG3HP-202ENST00000569755 579 ntBASIC15.88■□□□□ 0.13
LMX1AQ8TE12 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 AL033527.5-202ENST00000641632 1098 ntBASIC15.88■□□□□ 0.13
LMX1AQ8TE12 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC15.88■□□□□ 0.13
LMX1AQ8TE12 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms