Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 RPS15-207ENST00000591032 550 ntTSL 3 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 RPS15-212ENST00000593052 629 ntTSL 2 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SKA3Q8IX90 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SKA3Q8IX90 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SKA3Q8IX90 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SKA3Q8IX90 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SKA3Q8IX90 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SKA3Q8IX90 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SKA3Q8IX90 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SKA3Q8IX90 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SKA3Q8IX90 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SKA3Q8IX90 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
SKA3Q8IX90 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC14.56□□□□□ -0.08
SKA3Q8IX90 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
SKA3Q8IX90 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
SKA3Q8IX90 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC14.56□□□□□ -0.08
SKA3Q8IX90 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SKA3Q8IX90 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SKA3Q8IX90 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
SKA3Q8IX90 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SKA3Q8IX90 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC14.55□□□□□ -0.08
SKA3Q8IX90 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SKA3Q8IX90 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC14.55□□□□□ -0.08
SKA3Q8IX90 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC14.55□□□□□ -0.08
SKA3Q8IX90 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
SKA3Q8IX90 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
SKA3Q8IX90 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SKA3Q8IX90 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC14.55□□□□□ -0.08
SKA3Q8IX90 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC14.55□□□□□ -0.08
SKA3Q8IX90 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC14.55□□□□□ -0.08
SKA3Q8IX90 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
SKA3Q8IX90 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC14.55□□□□□ -0.08
SKA3Q8IX90 AC109635.5-201ENST00000533593 962 ntBASIC14.55□□□□□ -0.08
SKA3Q8IX90 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC14.55□□□□□ -0.08
SKA3Q8IX90 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
SKA3Q8IX90 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SKA3Q8IX90 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SKA3Q8IX90 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC14.55□□□□□ -0.08
SKA3Q8IX90 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
SKA3Q8IX90 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SKA3Q8IX90 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SKA3Q8IX90 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SKA3Q8IX90 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC14.55□□□□□ -0.08
SKA3Q8IX90 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SKA3Q8IX90 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC14.55□□□□□ -0.08
SKA3Q8IX90 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SKA3Q8IX90 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
SKA3Q8IX90 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SKA3Q8IX90 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SKA3Q8IX90 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC14.55□□□□□ -0.08
SKA3Q8IX90 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC14.54□□□□□ -0.08
SKA3Q8IX90 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SKA3Q8IX90 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SKA3Q8IX90 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC14.54□□□□□ -0.08
SKA3Q8IX90 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SKA3Q8IX90 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC14.54□□□□□ -0.08
SKA3Q8IX90 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SKA3Q8IX90 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SKA3Q8IX90 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SKA3Q8IX90 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SKA3Q8IX90 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SKA3Q8IX90 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SKA3Q8IX90 HYMAI-201ENST00000635591 3347 ntBASIC14.54□□□□□ -0.08
SKA3Q8IX90 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
SKA3Q8IX90 DPM2-202ENST00000373110 738 ntTSL 2 BASIC14.54□□□□□ -0.08
SKA3Q8IX90 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SKA3Q8IX90 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC14.54□□□□□ -0.08
SKA3Q8IX90 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SKA3Q8IX90 MCCD1P2-201ENST00000423228 335 ntBASIC14.54□□□□□ -0.08
SKA3Q8IX90 AC004832.2-201ENST00000426397 482 ntBASIC14.54□□□□□ -0.08
SKA3Q8IX90 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SKA3Q8IX90 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SKA3Q8IX90 FIS1-203ENST00000442303 631 ntTSL 3 BASIC14.54□□□□□ -0.08
SKA3Q8IX90 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SKA3Q8IX90 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC14.54□□□□□ -0.08
SKA3Q8IX90 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC14.54□□□□□ -0.08
SKA3Q8IX90 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC14.54□□□□□ -0.08
SKA3Q8IX90 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC14.54□□□□□ -0.08
SKA3Q8IX90 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SKA3Q8IX90 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
SKA3Q8IX90 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC14.54□□□□□ -0.08
SKA3Q8IX90 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms