Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
VPS53Q5VIR6 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS53Q5VIR6 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS53Q5VIR6 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
VPS53Q5VIR6 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC19.79■□□□□ 0.76
VPS53Q5VIR6 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
VPS53Q5VIR6 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS53Q5VIR6 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS53Q5VIR6 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS53Q5VIR6 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS53Q5VIR6 BSG-215ENST00000618006 1329 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 ACTG1P14-201ENST00000446382 1122 ntBASIC19.78■□□□□ 0.76
VPS53Q5VIR6 TIMM8BP1-201ENST00000452384 211 ntBASIC19.78■□□□□ 0.76
VPS53Q5VIR6 CFL1-202ENST00000524553 860 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 AC026120.1-201ENST00000611536 926 ntBASIC19.78■□□□□ 0.76
VPS53Q5VIR6 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 AC139530.3-201ENST00000620344 690 ntBASIC19.78■□□□□ 0.76
VPS53Q5VIR6 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC19.78■□□□□ 0.76
VPS53Q5VIR6 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC19.77■□□□□ 0.76
VPS53Q5VIR6 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC19.77■□□□□ 0.76
VPS53Q5VIR6 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
VPS53Q5VIR6 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC19.77■□□□□ 0.76
VPS53Q5VIR6 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS53Q5VIR6 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC19.77■□□□□ 0.76
VPS53Q5VIR6 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS53Q5VIR6 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC19.77■□□□□ 0.76
VPS53Q5VIR6 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS53Q5VIR6 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS53Q5VIR6 STOM-202ENST00000347359 870 ntTSL 2 BASIC19.77■□□□□ 0.76
VPS53Q5VIR6 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC19.77■□□□□ 0.76
VPS53Q5VIR6 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS53Q5VIR6 AC211486.1-202ENST00000416371 468 ntBASIC19.77■□□□□ 0.76
VPS53Q5VIR6 SPCS2P4-201ENST00000436160 681 ntBASIC19.77■□□□□ 0.76
VPS53Q5VIR6 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC19.77■□□□□ 0.76
VPS53Q5VIR6 AC211476.1-201ENST00000503899 468 ntBASIC19.77■□□□□ 0.76
VPS53Q5VIR6 AC079140.1-201ENST00000508039 487 ntBASIC19.77■□□□□ 0.76
VPS53Q5VIR6 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC19.77■□□□□ 0.76
VPS53Q5VIR6 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC19.77■□□□□ 0.76
VPS53Q5VIR6 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
VPS53Q5VIR6 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS53Q5VIR6 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC19.77■□□□□ 0.76
VPS53Q5VIR6 AC022145.2-201ENST00000598203 171 ntBASIC19.77■□□□□ 0.76
VPS53Q5VIR6 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC19.77■□□□□ 0.76
VPS53Q5VIR6 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC19.77■□□□□ 0.76
VPS53Q5VIR6 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS53Q5VIR6 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
VPS53Q5VIR6 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS53Q5VIR6 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
VPS53Q5VIR6 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS53Q5VIR6 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC19.77■□□□□ 0.76
VPS53Q5VIR6 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VPS53Q5VIR6 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC19.77■□□□□ 0.76
VPS53Q5VIR6 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
VPS53Q5VIR6 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
VPS53Q5VIR6 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
VPS53Q5VIR6 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC19.76■□□□□ 0.75
VPS53Q5VIR6 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms