Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RC3H1Q5TC82 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RC3H1Q5TC82 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RC3H1Q5TC82 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RC3H1Q5TC82 BAATP1-201ENST00000412284 1225 ntBASIC20.33■□□□□ 0.85
RC3H1Q5TC82 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC20.33■□□□□ 0.85
RC3H1Q5TC82 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
RC3H1Q5TC82 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC20.33■□□□□ 0.85
RC3H1Q5TC82 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC20.33■□□□□ 0.85
RC3H1Q5TC82 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC20.33■□□□□ 0.85
RC3H1Q5TC82 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC20.33■□□□□ 0.85
RC3H1Q5TC82 IGHV3OR16-16-201ENST00000563644 343 ntBASIC20.33■□□□□ 0.85
RC3H1Q5TC82 AC009486.1-201ENST00000569860 813 ntBASIC20.33■□□□□ 0.85
RC3H1Q5TC82 CLUHP6-201ENST00000580789 941 ntBASIC20.33■□□□□ 0.85
RC3H1Q5TC82 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC20.33■□□□□ 0.85
RC3H1Q5TC82 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC20.33■□□□□ 0.85
RC3H1Q5TC82 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
RC3H1Q5TC82 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
RC3H1Q5TC82 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
RC3H1Q5TC82 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC20.33■□□□□ 0.84
RC3H1Q5TC82 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.84
RC3H1Q5TC82 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
RC3H1Q5TC82 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
RC3H1Q5TC82 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC20.33■□□□□ 0.84
RC3H1Q5TC82 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC20.33■□□□□ 0.84
RC3H1Q5TC82 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC20.33■□□□□ 0.84
RC3H1Q5TC82 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RC3H1Q5TC82 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC20.32■□□□□ 0.84
RC3H1Q5TC82 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
RC3H1Q5TC82 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC20.32■□□□□ 0.84
RC3H1Q5TC82 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RC3H1Q5TC82 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
RC3H1Q5TC82 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RC3H1Q5TC82 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
RC3H1Q5TC82 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
RC3H1Q5TC82 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RC3H1Q5TC82 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
RC3H1Q5TC82 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC20.32■□□□□ 0.84
RC3H1Q5TC82 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
RC3H1Q5TC82 AL355864.2-201ENST00000447420 863 ntBASIC20.32■□□□□ 0.84
RC3H1Q5TC82 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC20.32■□□□□ 0.84
RC3H1Q5TC82 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
RC3H1Q5TC82 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
RC3H1Q5TC82 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC20.32■□□□□ 0.84
RC3H1Q5TC82 AC079316.1-201ENST00000548397 411 ntBASIC20.32■□□□□ 0.84
RC3H1Q5TC82 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
RC3H1Q5TC82 AC120045.2-201ENST00000567334 178 ntBASIC20.32■□□□□ 0.84
RC3H1Q5TC82 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC20.32■□□□□ 0.84
RC3H1Q5TC82 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC20.32■□□□□ 0.84
RC3H1Q5TC82 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
RC3H1Q5TC82 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RC3H1Q5TC82 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RC3H1Q5TC82 AC060834.1-201ENST00000443027 2032 ntBASIC20.32■□□□□ 0.84
RC3H1Q5TC82 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
RC3H1Q5TC82 RERG-209ENST00000546331 1383 ntTSL 2 BASIC20.32■□□□□ 0.84
RC3H1Q5TC82 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
RC3H1Q5TC82 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 PFN1P12-201ENST00000455938 534 ntBASIC20.31■□□□□ 0.84
RC3H1Q5TC82 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 POU5F1P6-201ENST00000466990 990 ntBASIC20.31■□□□□ 0.84
RC3H1Q5TC82 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 LOX-206ENST00000639739 1626 ntTSL 5 BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
RC3H1Q5TC82 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC20.3■□□□□ 0.84
RC3H1Q5TC82 NEFHP1-201ENST00000412845 2629 ntBASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms