Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
PDLIM3Q53GG5 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
PDLIM3Q53GG5 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
PDLIM3Q53GG5 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
PDLIM3Q53GG5 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
PDLIM3Q53GG5 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC13.7□□□□□ -0.22
PDLIM3Q53GG5 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC13.7□□□□□ -0.22
PDLIM3Q53GG5 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
PDLIM3Q53GG5 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 HYMAI-201ENST00000635591 3347 ntBASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 LINC00895-201ENST00000629028 1637 ntBASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 INIP-202ENST00000374236 874 ntTSL 2 BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 KLF4P1-201ENST00000412782 1185 ntBASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 ACTG1P4-201ENST00000425123 1122 ntBASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 CRCP-205ENST00000431089 942 ntTSL 2 BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 OR7E14P-202ENST00000530490 1290 ntBASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 AC021087.4-201ENST00000563761 564 ntBASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 COX5A-204ENST00000567270 579 ntTSL 3 BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 SBF1P1-201ENST00000444527 5631 ntBASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
PDLIM3Q53GG5 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 MYB-242ENST00000618728 3545 ntTSL 5 BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 AL391256.1-201ENST00000443260 1855 ntBASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 MTHFR-217ENST00000641820 1569 ntBASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 CD99-202ENST00000381180 530 ntTSL 2 BASIC13.68□□□□□ -0.22
PDLIM3Q53GG5 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms