Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC22.36■■□□□ 1.17
MSH6P52701 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
MSH6P52701 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC22.36■■□□□ 1.17
MSH6P52701 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
MSH6P52701 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
MSH6P52701 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC22.36■■□□□ 1.17
MSH6P52701 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC22.36■■□□□ 1.17
MSH6P52701 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
MSH6P52701 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC22.36■■□□□ 1.17
MSH6P52701 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
MSH6P52701 RPS3-201ENST00000278572 907 ntTSL 3 BASIC22.36■■□□□ 1.17
MSH6P52701 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC22.36■■□□□ 1.17
MSH6P52701 C1QBPP1-201ENST00000400117 770 ntBASIC22.36■■□□□ 1.17
MSH6P52701 HINT2P1-201ENST00000419438 481 ntBASIC22.36■■□□□ 1.17
MSH6P52701 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC22.36■■□□□ 1.17
MSH6P52701 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
MSH6P52701 AC007969.1-201ENST00000433675 447 ntBASIC22.36■■□□□ 1.17
MSH6P52701 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC22.36■■□□□ 1.17
MSH6P52701 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
MSH6P52701 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC22.36■■□□□ 1.17
MSH6P52701 AKR7A2P1-201ENST00000460134 915 ntBASIC22.36■■□□□ 1.17
MSH6P52701 AC091804.1-201ENST00000486888 567 ntBASIC22.36■■□□□ 1.17
MSH6P52701 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
MSH6P52701 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC22.36■■□□□ 1.17
MSH6P52701 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
MSH6P52701 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC22.36■■□□□ 1.17
MSH6P52701 KC6-205ENST00000599934 556 ntTSL 4 BASIC22.36■■□□□ 1.17
MSH6P52701 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC22.36■■□□□ 1.17
MSH6P52701 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC22.36■■□□□ 1.17
MSH6P52701 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC22.36■■□□□ 1.17
MSH6P52701 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC22.35■■□□□ 1.17
MSH6P52701 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
MSH6P52701 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
MSH6P52701 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
MSH6P52701 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
MSH6P52701 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
MSH6P52701 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
MSH6P52701 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
MSH6P52701 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
MSH6P52701 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
MSH6P52701 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
MSH6P52701 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC22.35■■□□□ 1.17
MSH6P52701 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC22.35■■□□□ 1.17
MSH6P52701 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC22.35■■□□□ 1.17
MSH6P52701 LARP4-220ENST00000615080 856 ntTSL 5 BASIC22.35■■□□□ 1.17
MSH6P52701 AC138028.6-201ENST00000616106 1482 ntBASIC22.35■■□□□ 1.17
MSH6P52701 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
MSH6P52701 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
MSH6P52701 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
MSH6P52701 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
MSH6P52701 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
MSH6P52701 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
MSH6P52701 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC22.34■■□□□ 1.17
MSH6P52701 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
MSH6P52701 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
MSH6P52701 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
MSH6P52701 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC22.34■■□□□ 1.17
MSH6P52701 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
MSH6P52701 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC22.34■■□□□ 1.17
MSH6P52701 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC22.34■■□□□ 1.17
MSH6P52701 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
MSH6P52701 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC22.34■■□□□ 1.17
MSH6P52701 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
MSH6P52701 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC22.34■■□□□ 1.17
MSH6P52701 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
MSH6P52701 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC22.34■■□□□ 1.17
MSH6P52701 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
MSH6P52701 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
MSH6P52701 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC22.34■■□□□ 1.17
MSH6P52701 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC22.34■■□□□ 1.17
MSH6P52701 UPF3AP2-201ENST00000457924 1132 ntBASIC22.34■■□□□ 1.17
MSH6P52701 RERG-205ENST00000537647 935 ntTSL 2 BASIC22.34■■□□□ 1.17
MSH6P52701 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
MSH6P52701 MIR4722-201ENST00000578292 60 ntBASIC22.34■■□□□ 1.17
MSH6P52701 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC22.34■■□□□ 1.17
MSH6P52701 AL139011.1-202ENST00000642063 584 ntBASIC22.34■■□□□ 1.17
MSH6P52701 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
MSH6P52701 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
MSH6P52701 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
MSH6P52701 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
MSH6P52701 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC22.33■■□□□ 1.17
MSH6P52701 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC22.33■■□□□ 1.17
MSH6P52701 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
MSH6P52701 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
MSH6P52701 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC22.33■■□□□ 1.17
MSH6P52701 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC22.33■■□□□ 1.17
MSH6P52701 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
MSH6P52701 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC22.33■■□□□ 1.17
MSH6P52701 RERG-209ENST00000546331 1383 ntTSL 2 BASIC22.33■■□□□ 1.17
MSH6P52701 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.17
MSH6P52701 AL662890.1-201ENST00000396818 632 ntBASIC22.33■■□□□ 1.17
MSH6P52701 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC22.33■■□□□ 1.17
MSH6P52701 AC023310.1-201ENST00000554836 735 ntBASIC22.33■■□□□ 1.17
MSH6P52701 AP001063.1-201ENST00000568332 529 ntBASIC22.33■■□□□ 1.17
MSH6P52701 KLK3-211ENST00000597483 810 ntTSL 2 BASIC22.33■■□□□ 1.17
MSH6P52701 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC22.33■■□□□ 1.17
MSH6P52701 AC005695.3-201ENST00000614522 232 ntBASIC22.33■■□□□ 1.17
MSH6P52701 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
MSH6P52701 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.16
MSH6P52701 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 125.2 ms