Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC19.5■□□□□ 0.71
BRCA1P38398 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
BRCA1P38398 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
BRCA1P38398 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC19.5■□□□□ 0.71
BRCA1P38398 FTLP10-202ENST00000505798 471 ntBASIC19.5■□□□□ 0.71
BRCA1P38398 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC19.5■□□□□ 0.71
BRCA1P38398 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC19.5■□□□□ 0.71
BRCA1P38398 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
BRCA1P38398 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
BRCA1P38398 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
BRCA1P38398 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
BRCA1P38398 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.49■□□□□ 0.71
BRCA1P38398 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
BRCA1P38398 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
BRCA1P38398 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC19.49■□□□□ 0.71
BRCA1P38398 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
BRCA1P38398 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC19.49■□□□□ 0.71
BRCA1P38398 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC19.49■□□□□ 0.71
BRCA1P38398 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC19.49■□□□□ 0.71
BRCA1P38398 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
BRCA1P38398 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
BRCA1P38398 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC19.49■□□□□ 0.71
BRCA1P38398 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC19.49■□□□□ 0.71
BRCA1P38398 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
BRCA1P38398 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC19.49■□□□□ 0.71
BRCA1P38398 FAM197Y7-201ENST00000432892 766 ntBASIC19.49■□□□□ 0.71
BRCA1P38398 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC19.49■□□□□ 0.71
BRCA1P38398 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC19.49■□□□□ 0.71
BRCA1P38398 ELP6-209ENST00000446787 894 ntTSL 3 BASIC19.49■□□□□ 0.71
BRCA1P38398 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
BRCA1P38398 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC19.49■□□□□ 0.71
BRCA1P38398 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
BRCA1P38398 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC19.49■□□□□ 0.71
BRCA1P38398 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC19.49■□□□□ 0.71
BRCA1P38398 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC19.49■□□□□ 0.71
BRCA1P38398 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC19.49■□□□□ 0.71
BRCA1P38398 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC19.49■□□□□ 0.71
BRCA1P38398 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
BRCA1P38398 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
BRCA1P38398 GGT3P-204ENST00000453783 1664 ntBASIC19.49■□□□□ 0.71
BRCA1P38398 CD276-201ENST00000318424 2738 ntTSL 5 BASIC19.49■□□□□ 0.71
BRCA1P38398 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC19.49■□□□□ 0.71
BRCA1P38398 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
BRCA1P38398 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
BRCA1P38398 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
BRCA1P38398 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
BRCA1P38398 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC19.48■□□□□ 0.71
BRCA1P38398 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
BRCA1P38398 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC19.48■□□□□ 0.71
BRCA1P38398 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
BRCA1P38398 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
BRCA1P38398 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
BRCA1P38398 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
BRCA1P38398 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
BRCA1P38398 AC136604.1-201ENST00000418535 575 ntBASIC19.48■□□□□ 0.71
BRCA1P38398 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
BRCA1P38398 FTLP1-201ENST00000449155 526 ntBASIC19.48■□□□□ 0.71
BRCA1P38398 KSR1-207ENST00000578981 748 ntTSL 4 BASIC19.48■□□□□ 0.71
BRCA1P38398 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC19.48■□□□□ 0.71
BRCA1P38398 AC093813.1-201ENST00000605066 256 ntBASIC19.48■□□□□ 0.71
BRCA1P38398 AC138649.2-201ENST00000615886 705 ntBASIC19.48■□□□□ 0.71
BRCA1P38398 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC19.48■□□□□ 0.71
BRCA1P38398 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
BRCA1P38398 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
BRCA1P38398 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC19.48■□□□□ 0.71
BRCA1P38398 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
BRCA1P38398 AL391256.1-201ENST00000443260 1855 ntBASIC19.48■□□□□ 0.71
BRCA1P38398 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
BRCA1P38398 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
BRCA1P38398 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
BRCA1P38398 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
BRCA1P38398 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
BRCA1P38398 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
BRCA1P38398 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.48■□□□□ 0.71
BRCA1P38398 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC19.48■□□□□ 0.71
BRCA1P38398 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
BRCA1P38398 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
BRCA1P38398 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
BRCA1P38398 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
BRCA1P38398 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
BRCA1P38398 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
BRCA1P38398 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
BRCA1P38398 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC19.48■□□□□ 0.71
BRCA1P38398 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
BRCA1P38398 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
BRCA1P38398 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC19.48■□□□□ 0.71
BRCA1P38398 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC19.48■□□□□ 0.71
BRCA1P38398 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
BRCA1P38398 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
BRCA1P38398 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
BRCA1P38398 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC19.47■□□□□ 0.71
BRCA1P38398 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
BRCA1P38398 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
BRCA1P38398 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
BRCA1P38398 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC19.47■□□□□ 0.71
BRCA1P38398 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC19.47■□□□□ 0.71
BRCA1P38398 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
BRCA1P38398 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC19.47■□□□□ 0.71
BRCA1P38398 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC19.47■□□□□ 0.71
BRCA1P38398 FOS-202ENST00000535987 1402 ntTSL 2 BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms