Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.98■□□□□ 0.63
SCN4AP35499 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SCN4AP35499 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SCN4AP35499 AL691432.1-201ENST00000596308 1422 ntBASIC18.98■□□□□ 0.63
SCN4AP35499 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SCN4AP35499 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SCN4AP35499 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.98■□□□□ 0.63
SCN4AP35499 AC092053.1-201ENST00000605787 1936 ntBASIC18.98■□□□□ 0.63
SCN4AP35499 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.98■□□□□ 0.63
SCN4AP35499 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SCN4AP35499 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SCN4AP35499 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.98■□□□□ 0.63
SCN4AP35499 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SCN4AP35499 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SCN4AP35499 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
SCN4AP35499 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SCN4AP35499 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC18.97■□□□□ 0.63
SCN4AP35499 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC18.97■□□□□ 0.63
SCN4AP35499 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC18.97■□□□□ 0.63
SCN4AP35499 AP001505.2-201ENST00000616815 443 ntBASIC18.97■□□□□ 0.63
SCN4AP35499 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC18.97■□□□□ 0.63
SCN4AP35499 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC18.97■□□□□ 0.63
SCN4AP35499 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC18.97■□□□□ 0.63
SCN4AP35499 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SCN4AP35499 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
SCN4AP35499 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SCN4AP35499 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SCN4AP35499 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SCN4AP35499 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
SCN4AP35499 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
SCN4AP35499 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
SCN4AP35499 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
SCN4AP35499 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SCN4AP35499 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
SCN4AP35499 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SCN4AP35499 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC18.97■□□□□ 0.63
SCN4AP35499 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
SCN4AP35499 AC245884.6-201ENST00000515672 1067 ntBASIC18.97■□□□□ 0.63
SCN4AP35499 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC18.97■□□□□ 0.63
SCN4AP35499 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.97■□□□□ 0.63
SCN4AP35499 CYGB-203ENST00000589145 788 ntTSL 3 BASIC18.97■□□□□ 0.63
SCN4AP35499 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC18.97■□□□□ 0.63
SCN4AP35499 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC18.97■□□□□ 0.63
SCN4AP35499 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
SCN4AP35499 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SCN4AP35499 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC18.96■□□□□ 0.63
SCN4AP35499 AC092978.1-202ENST00000637590 1327 ntBASIC18.96■□□□□ 0.63
SCN4AP35499 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SCN4AP35499 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SCN4AP35499 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SCN4AP35499 SDCCAG3P2-201ENST00000326105 1023 ntBASIC18.96■□□□□ 0.63
SCN4AP35499 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SCN4AP35499 HLA-DQB2-229ENST00000411527 1059 ntBASIC18.96■□□□□ 0.63
SCN4AP35499 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC18.96■□□□□ 0.63
SCN4AP35499 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC18.96■□□□□ 0.63
SCN4AP35499 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
SCN4AP35499 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC18.96■□□□□ 0.63
SCN4AP35499 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SCN4AP35499 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SCN4AP35499 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC18.96■□□□□ 0.63
SCN4AP35499 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC18.96■□□□□ 0.63
SCN4AP35499 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SCN4AP35499 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SCN4AP35499 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC18.96■□□□□ 0.63
SCN4AP35499 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.96■□□□□ 0.63
SCN4AP35499 AC092068.3-201ENST00000587894 2016 ntBASIC18.96■□□□□ 0.63
SCN4AP35499 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC18.96■□□□□ 0.63
SCN4AP35499 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SCN4AP35499 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.96■□□□□ 0.63
SCN4AP35499 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.96■□□□□ 0.63
SCN4AP35499 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
SCN4AP35499 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
SCN4AP35499 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.96■□□□□ 0.63
SCN4AP35499 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SCN4AP35499 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SCN4AP35499 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.62
SCN4AP35499 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SCN4AP35499 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC18.95■□□□□ 0.62
SCN4AP35499 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC18.95■□□□□ 0.62
SCN4AP35499 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SCN4AP35499 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SCN4AP35499 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC18.95■□□□□ 0.62
SCN4AP35499 AC026410.3-201ENST00000514280 936 ntBASIC18.95■□□□□ 0.62
SCN4AP35499 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC18.95■□□□□ 0.62
SCN4AP35499 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC18.95■□□□□ 0.62
SCN4AP35499 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC18.95■□□□□ 0.62
SCN4AP35499 AC138649.2-201ENST00000615886 705 ntBASIC18.95■□□□□ 0.62
SCN4AP35499 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SCN4AP35499 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
SCN4AP35499 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SCN4AP35499 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SCN4AP35499 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SCN4AP35499 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.95■□□□□ 0.62
SCN4AP35499 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC18.95■□□□□ 0.62
SCN4AP35499 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.95■□□□□ 0.62
SCN4AP35499 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
SCN4AP35499 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SCN4AP35499 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SCN4AP35499 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SCN4AP35499 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms