Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL6A3P12111 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL6A3P12111 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.7■□□□□ 0.26
COL6A3P12111 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC16.7■□□□□ 0.26
COL6A3P12111 NEU3-205ENST00000531619 582 ntTSL 5 BASIC16.7■□□□□ 0.26
COL6A3P12111 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL6A3P12111 MIR4649-201ENST00000582839 64 ntBASIC16.7■□□□□ 0.26
COL6A3P12111 AC100757.4-201ENST00000626934 759 ntBASIC16.7■□□□□ 0.26
COL6A3P12111 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
COL6A3P12111 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC16.7■□□□□ 0.26
COL6A3P12111 TP73-209ENST00000603362 1668 ntTSL 5 BASIC16.7■□□□□ 0.26
COL6A3P12111 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL6A3P12111 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL6A3P12111 SNX15-201ENST00000352068 771 ntTSL 5 BASIC16.7■□□□□ 0.26
COL6A3P12111 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC16.7■□□□□ 0.26
COL6A3P12111 SERBP1P2-201ENST00000436888 1164 ntBASIC16.7■□□□□ 0.26
COL6A3P12111 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC16.7■□□□□ 0.26
COL6A3P12111 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL6A3P12111 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC16.7■□□□□ 0.26
COL6A3P12111 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
COL6A3P12111 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
COL6A3P12111 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL6A3P12111 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC16.69■□□□□ 0.26
COL6A3P12111 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.69■□□□□ 0.26
COL6A3P12111 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC16.69■□□□□ 0.26
COL6A3P12111 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL6A3P12111 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL6A3P12111 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC16.69■□□□□ 0.26
COL6A3P12111 AC093724.1-201ENST00000448659 1027 ntBASIC16.69■□□□□ 0.26
COL6A3P12111 AC093433.1-201ENST00000458048 571 ntBASIC16.69■□□□□ 0.26
COL6A3P12111 RPL18P13-201ENST00000478088 569 ntBASIC16.69■□□□□ 0.26
COL6A3P12111 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL6A3P12111 AC092171.5-201ENST00000608012 942 ntBASIC16.69■□□□□ 0.26
COL6A3P12111 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
COL6A3P12111 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
COL6A3P12111 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL6A3P12111 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL6A3P12111 AL138709.1-201ENST00000614840 1693 ntBASIC16.69■□□□□ 0.26
COL6A3P12111 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
COL6A3P12111 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL6A3P12111 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL6A3P12111 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC16.69■□□□□ 0.26
COL6A3P12111 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL6A3P12111 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL6A3P12111 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL6A3P12111 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL6A3P12111 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC16.69■□□□□ 0.26
COL6A3P12111 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL6A3P12111 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL6A3P12111 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL6A3P12111 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
COL6A3P12111 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.69■□□□□ 0.26
COL6A3P12111 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL6A3P12111 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL6A3P12111 AL357373.1-201ENST00000394974 322 ntBASIC16.69■□□□□ 0.26
COL6A3P12111 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC16.69■□□□□ 0.26
COL6A3P12111 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL6A3P12111 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
COL6A3P12111 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
COL6A3P12111 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COL6A3P12111 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL6A3P12111 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.68■□□□□ 0.26
COL6A3P12111 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL6A3P12111 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
COL6A3P12111 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL6A3P12111 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL6A3P12111 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC16.68■□□□□ 0.26
COL6A3P12111 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC16.68■□□□□ 0.26
COL6A3P12111 AC004522.1-201ENST00000419978 654 ntBASIC16.68■□□□□ 0.26
COL6A3P12111 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC16.68■□□□□ 0.26
COL6A3P12111 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.68■□□□□ 0.26
COL6A3P12111 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
COL6A3P12111 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL6A3P12111 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC16.68■□□□□ 0.26
COL6A3P12111 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC16.68■□□□□ 0.26
COL6A3P12111 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL6A3P12111 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL6A3P12111 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL6A3P12111 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16.68■□□□□ 0.26
COL6A3P12111 FAM86KP-201ENST00000509817 987 ntBASIC16.68■□□□□ 0.26
COL6A3P12111 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC16.68■□□□□ 0.26
COL6A3P12111 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC16.68■□□□□ 0.26
COL6A3P12111 AC091544.8-201ENST00000619490 361 ntBASIC16.68■□□□□ 0.26
COL6A3P12111 AC138466.4-201ENST00000623965 852 ntBASIC16.68■□□□□ 0.26
COL6A3P12111 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC16.68■□□□□ 0.26
COL6A3P12111 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL6A3P12111 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
COL6A3P12111 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
COL6A3P12111 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.68■□□□□ 0.26
COL6A3P12111 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
COL6A3P12111 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A3P12111 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
COL6A3P12111 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC16.67■□□□□ 0.26
COL6A3P12111 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC16.67■□□□□ 0.26
COL6A3P12111 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A3P12111 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL6A3P12111 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC16.67■□□□□ 0.26
COL6A3P12111 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.67■□□□□ 0.26
COL6A3P12111 AGER-206ENST00000375070 1463 ntTSL 5 BASIC16.67■□□□□ 0.26
COL6A3P12111 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms