Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
MSH4O15457 TREML5P-201ENST00000421694 576 ntBASIC18.33■□□□□ 0.52
MSH4O15457 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
MSH4O15457 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC18.33■□□□□ 0.52
MSH4O15457 LITAF-210ENST00000571976 548 ntTSL 2 BASIC18.33■□□□□ 0.52
MSH4O15457 LITAF-214ENST00000574703 486 ntTSL 2 BASIC18.33■□□□□ 0.52
MSH4O15457 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC18.33■□□□□ 0.52
MSH4O15457 AL133215.2-201ENST00000609242 977 ntBASIC18.33■□□□□ 0.52
MSH4O15457 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSH4O15457 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
MSH4O15457 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSH4O15457 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSH4O15457 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC18.33■□□□□ 0.52
MSH4O15457 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSH4O15457 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSH4O15457 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC18.33■□□□□ 0.52
MSH4O15457 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC18.33■□□□□ 0.52
MSH4O15457 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
MSH4O15457 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
MSH4O15457 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC18.33■□□□□ 0.52
MSH4O15457 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSH4O15457 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
MSH4O15457 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSH4O15457 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSH4O15457 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
MSH4O15457 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSH4O15457 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSH4O15457 FO538757.1-201ENST00000623083 1397 ntBASIC18.32■□□□□ 0.52
MSH4O15457 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSH4O15457 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
MSH4O15457 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
MSH4O15457 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSH4O15457 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
MSH4O15457 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSH4O15457 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC18.32■□□□□ 0.52
MSH4O15457 MIR943-201ENST00000401286 94 ntBASIC18.32■□□□□ 0.52
MSH4O15457 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC18.32■□□□□ 0.52
MSH4O15457 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSH4O15457 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC18.32■□□□□ 0.52
MSH4O15457 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
MSH4O15457 NAA38-207ENST00000576861 556 ntTSL 3 BASIC18.32■□□□□ 0.52
MSH4O15457 AC005498.2-205ENST00000593218 784 ntBASIC18.32■□□□□ 0.52
MSH4O15457 RN7SL828P-201ENST00000607615 303 ntBASIC18.32■□□□□ 0.52
MSH4O15457 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC18.32■□□□□ 0.52
MSH4O15457 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
MSH4O15457 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSH4O15457 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
MSH4O15457 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
MSH4O15457 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
MSH4O15457 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
MSH4O15457 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC18.32■□□□□ 0.52
MSH4O15457 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSH4O15457 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSH4O15457 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
MSH4O15457 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
MSH4O15457 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
MSH4O15457 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
MSH4O15457 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
MSH4O15457 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC18.31■□□□□ 0.52
MSH4O15457 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
MSH4O15457 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
MSH4O15457 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
MSH4O15457 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
MSH4O15457 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC18.31■□□□□ 0.52
MSH4O15457 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC18.31■□□□□ 0.52
MSH4O15457 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSH4O15457 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSH4O15457 AC006449.5-201ENST00000610658 2098 ntBASIC18.31■□□□□ 0.52
MSH4O15457 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
MSH4O15457 AC092580.3-201ENST00000430932 139 ntBASIC18.31■□□□□ 0.52
MSH4O15457 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
MSH4O15457 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
MSH4O15457 SATB1-217ENST00000493952 626 ntTSL 3 BASIC18.31■□□□□ 0.52
MSH4O15457 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC18.31■□□□□ 0.52
MSH4O15457 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSH4O15457 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSH4O15457 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
MSH4O15457 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC18.31■□□□□ 0.52
MSH4O15457 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC18.31■□□□□ 0.52
MSH4O15457 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSH4O15457 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSH4O15457 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC18.31■□□□□ 0.52
MSH4O15457 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
MSH4O15457 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSH4O15457 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSH4O15457 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
MSH4O15457 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
MSH4O15457 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
MSH4O15457 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
MSH4O15457 AL035456.1-201ENST00000456064 1369 ntBASIC18.3■□□□□ 0.52
MSH4O15457 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC18.3■□□□□ 0.52
MSH4O15457 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSH4O15457 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.3■□□□□ 0.52
MSH4O15457 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSH4O15457 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC18.3■□□□□ 0.52
MSH4O15457 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSH4O15457 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSH4O15457 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
MSH4O15457 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
MSH4O15457 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms