Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TCRBV7S3A2A0A539 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TCRBV7S3A2A0A539 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
TCRBV7S3A2A0A539 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC16.67■□□□□ 0.26
TCRBV7S3A2A0A539 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
TCRBV7S3A2A0A539 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TCRBV7S3A2A0A539 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC16.67■□□□□ 0.26
TCRBV7S3A2A0A539 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TCRBV7S3A2A0A539 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
TCRBV7S3A2A0A539 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
TCRBV7S3A2A0A539 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TCRBV7S3A2A0A539 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
TCRBV7S3A2A0A539 AC004870.1-201ENST00000315132 882 ntBASIC16.67■□□□□ 0.26
TCRBV7S3A2A0A539 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
TCRBV7S3A2A0A539 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
TCRBV7S3A2A0A539 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TCRBV7S3A2A0A539 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC16.67■□□□□ 0.26
TCRBV7S3A2A0A539 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC16.67■□□□□ 0.26
TCRBV7S3A2A0A539 PMS2P4-201ENST00000412466 1052 ntBASIC16.67■□□□□ 0.26
TCRBV7S3A2A0A539 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.67■□□□□ 0.26
TCRBV7S3A2A0A539 IGHV3-22-201ENST00000520721 359 ntBASIC16.67■□□□□ 0.26
TCRBV7S3A2A0A539 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC16.67■□□□□ 0.26
TCRBV7S3A2A0A539 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC16.67■□□□□ 0.26
TCRBV7S3A2A0A539 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.67■□□□□ 0.26
TCRBV7S3A2A0A539 AC126177.1-201ENST00000547829 2218 ntBASIC16.67■□□□□ 0.26
TCRBV7S3A2A0A539 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TCRBV7S3A2A0A539 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC16.67■□□□□ 0.26
TCRBV7S3A2A0A539 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.67■□□□□ 0.26
TCRBV7S3A2A0A539 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TCRBV7S3A2A0A539 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TCRBV7S3A2A0A539 AC008677.1-201ENST00000519230 1561 ntBASIC16.67■□□□□ 0.26
TCRBV7S3A2A0A539 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
TCRBV7S3A2A0A539 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
TCRBV7S3A2A0A539 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 AC016027.1-202ENST00000607927 1699 ntBASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 ATP6V0CP3-201ENST00000417255 467 ntBASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 AL450487.1-201ENST00000426799 995 ntBASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 LITAF-211ENST00000572255 516 ntTSL 4 BASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 TCAP-202ENST00000578283 583 ntTSL 5 BASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 U82695.1-201ENST00000635752 1889 ntBASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 AC013268.4-201ENST00000637413 2228 ntBASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
TCRBV7S3A2A0A539 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
TCRBV7S3A2A0A539 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.65■□□□□ 0.26
TCRBV7S3A2A0A539 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TCRBV7S3A2A0A539 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
TCRBV7S3A2A0A539 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC16.65■□□□□ 0.26
TCRBV7S3A2A0A539 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC16.65■□□□□ 0.26
TCRBV7S3A2A0A539 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC16.65■□□□□ 0.26
TCRBV7S3A2A0A539 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC16.65■□□□□ 0.26
TCRBV7S3A2A0A539 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TCRBV7S3A2A0A539 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TCRBV7S3A2A0A539 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
TCRBV7S3A2A0A539 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
TCRBV7S3A2A0A539 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TCRBV7S3A2A0A539 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TCRBV7S3A2A0A539 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
TCRBV7S3A2A0A539 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TCRBV7S3A2A0A539 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TCRBV7S3A2A0A539 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TCRBV7S3A2A0A539 CRYGEP-201ENST00000412192 528 ntBASIC16.65■□□□□ 0.26
TCRBV7S3A2A0A539 RHOQP3-201ENST00000437982 621 ntBASIC16.65■□□□□ 0.26
TCRBV7S3A2A0A539 AC093724.1-201ENST00000448659 1027 ntBASIC16.65■□□□□ 0.26
TCRBV7S3A2A0A539 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TCRBV7S3A2A0A539 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC16.65■□□□□ 0.26
TCRBV7S3A2A0A539 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.65■□□□□ 0.26
TCRBV7S3A2A0A539 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TCRBV7S3A2A0A539 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TCRBV7S3A2A0A539 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
TCRBV7S3A2A0A539 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TCRBV7S3A2A0A539 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms