Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC006116.8-202ENST00000587620 1550 ntBASIC5.11□□□□□ -1.59
SYNE1Q8NF91 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 PIK3R1-213ENST00000521657 3891 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 NME9-203ENST00000383180 2133 ntTSL 2 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 PRKD1-201ENST00000331968 3726 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC5.11□□□□□ -1.59
SYNE1Q8NF91 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 UXT-AS1-201ENST00000590504 1525 ntBASIC5.11□□□□□ -1.59
SYNE1Q8NF91 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 AC007274.1-201ENST00000439805 662 ntBASIC5.11□□□□□ -1.59
SYNE1Q8NF91 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 NKG7-205ENST00000600427 520 ntTSL 3 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 AC015656.1-201ENST00000624209 3578 ntBASIC5.11□□□□□ -1.59
SYNE1Q8NF91 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 DAB2IP-202ENST00000309989 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 SRRM1-201ENST00000323848 4011 ntAPPRIS P2 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 UCKL1-AS1-201ENST00000623569 3602 ntBASIC5.11□□□□□ -1.59
SYNE1Q8NF91 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 AC063926.2-201ENST00000623766 1308 ntBASIC5.11□□□□□ -1.59
SYNE1Q8NF91 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 SPDYE14P-201ENST00000442619 822 ntBASIC5.11□□□□□ -1.59
SYNE1Q8NF91 AP000344.2-201ENST00000512987 629 ntBASIC5.11□□□□□ -1.59
SYNE1Q8NF91 INO80E-210ENST00000567705 880 ntTSL 3 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 LYSMD4-203ENST00000378904 2122 ntBASIC5.11□□□□□ -1.59
SYNE1Q8NF91 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 TREML5P-201ENST00000421694 576 ntBASIC5.11□□□□□ -1.59
SYNE1Q8NF91 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC5.11□□□□□ -1.59
SYNE1Q8NF91 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SYNE1Q8NF91 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms